RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 BBS1Q8NFJ9 593 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 ZNF671Q8TAW3 534 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 SDSLQ96GA7 329 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 ZNF488Q96MN9 340 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 MEGF9Q9H1U4 602 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 LRP12Q9Y561 859 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 MEGF11A6BM72 1044 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 RFPL4AA6NLU0 287 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 RFPL4AL1F8VTS6 287 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 ALOX5APP20292 161 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 COX7A1P24310 79 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 MAP2K3P46734 347 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 TRIM25Q14258 630 aaKnown RBP13.7□□□□□ -0.22
CLN3-211ENST00000564091 CEACAM21Q3KPI0 293 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 SAMD5Q5TGI4 173 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 HAGHLQ6PII5 290 aaPredicted RBP13.7□□□□□ -0.22
CLN3-211ENST00000564091 CRIP3Q6Q6R5 217 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 MOB3CQ70IA8 216 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 THAP5Q7Z6K1 395 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 KRT77Q7Z794 578 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 TMEM179BQ7Z7N9 219 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 LYG1Q8N1E2 194 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 CD177Q8N6Q3 437 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 OR4M1Q8NGD0 313 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 OR2T6Q8NHC8 308 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 AQP3Q92482 292 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 CFHR4Q92496 578 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 CLPTM1LQ96KA5 538 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 NIPAL2Q9H841 368 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 DNAH3Q8TD57 4116 aa13.7□□□□□ -0.22
CLN3-211ENST00000564091 CHST1O43916 411 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 MTRF1O75570 445 aaKnown RBP13.69□□□□□ -0.22
CLN3-211ENST00000564091 DCTN3O75935 186 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 CST1P01037 141 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 VSIG10L2P0DP72 767 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 GYS2P54840 703 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 RPS7P62081 194 aaKnown RBP13.69□□□□□ -0.22
CLN3-211ENST00000564091 FBLN7Q53RD9 439 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 TMEM200BQ69YZ2 307 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 KRT74Q7RTS7 529 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 PIGWQ7Z7B1 504 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 COMMD2Q86X83 199 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 C11orf42Q8N5U0 333 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 PIFOQ8TCI5 191 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 PPP1R14AQ96A00 147 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 CHID1Q9BWS9 393 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 FAM206AQ9NX38 181 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 LAMP5Q9UJQ1 280 aa13.69□□□□□ -0.22
CLN3-211ENST00000564091 A0A0U1RQV5 110 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 TMEM269A0A1B0GVZ9 245 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 PRODHO43272 600 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 HMGN1P05114 100 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 RAP2AP10114 183 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 CCL3L1P16619 93 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 CEBPDP49716 269 aaPredicted RBP13.68□□□□□ -0.22
CLN3-211ENST00000564091 BMXP51813 675 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 MNAT1P51948 309 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 RPL31P62899 125 aaKnown RBP13.68□□□□□ -0.22
CLN3-211ENST00000564091 RIPPLY1Q0D2K3 151 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 FAM189A2Q15884 450 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 AANATQ16613 207 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 KPRPQ5T749 579 aaPredicted RBP13.68□□□□□ -0.22
CLN3-211ENST00000564091 PLCXD3Q63HM9 321 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 C11orf88Q6PI97 169 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 ACP7Q6ZNF0 438 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 TRPM8Q7Z2W7 1104 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 OR5A2Q8NGI9 324 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 OR51E1Q8TCB6 317 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 TEAD3Q99594 435 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 NKX3-1Q99801 234 aaPredicted RBP13.68□□□□□ -0.22
CLN3-211ENST00000564091 PBOV1Q9GZY1 135 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 MUC13Q9H3R2 512 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 HEXA-AS1Q9H8Q6 139 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 RAB18Q9NP72 206 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 GPR84Q9NQS5 396 aa13.68□□□□□ -0.22
CLN3-211ENST00000564091 OR5B21A6NL26 309 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 PRR32B1ATL7 298 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 SYNGR1O43759 233 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 MRPL3P09001 348 aaKnown RBP13.67□□□□□ -0.22
CLN3-211ENST00000564091 FAHP16930 419 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 SLC2A5P22732 501 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 PRDX2P32119 198 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 RAB13P51153 203 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 GNGT1P63211 74 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 PLA1AQ53H76 456 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 TMEM236Q5W0B7 351 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 Q6ZPA2 131 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 LHFPL4Q7Z7J7 247 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 HS3ST5Q8IZT8 346 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 BATF2Q8N1L9 274 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 ARHGAP24Q8N264 748 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 OR5K1Q8NHB7 308 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 CCDC124Q96CT7 223 aaKnown RBP13.67□□□□□ -0.22
CLN3-211ENST00000564091 NSL1Q96IY1 281 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 TTTY10Q9BZA0 68 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 NPFFR1Q9GZQ6 430 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 RANBP3Q9H6Z4 567 aaPredicted RBP13.67□□□□□ -0.22
CLN3-211ENST00000564091 RASL12Q9NYN1 266 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 PIGLQ9Y2B2 252 aa13.67□□□□□ -0.22
CLN3-211ENST00000564091 ARRDC5A6NEK1 342 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms