RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 FBLN7Q53RD9 439 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 ATPAF1Q5TC12 328 aaPredicted RBP15.54■□□□□ 0.08
VPS35-202ENST00000561713 LCN1P1Q5VSP4 162 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 ZNRF1Q8ND25 227 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 C8orf46Q8TAG6 207 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 SLC7A6OSQ96CW6 309 aaPredicted RBP15.54■□□□□ 0.08
VPS35-202ENST00000561713 OR8B4Q96RC9 309 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 TEAD3Q99594 435 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 YIPF3Q9GZM5 350 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 OR51I2Q9H344 312 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 FBP1P09467 338 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 MAP2K3P46734 347 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 CEBPDP49716 269 aaPredicted RBP15.53■□□□□ 0.08
VPS35-202ENST00000561713 DAPP51397 102 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 GNG3P63215 75 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 C11orf91Q3C1V1 193 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 FAM76BQ5HYJ3 339 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 FAHD1Q6P587 224 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 HAGHLQ6PII5 290 aaPredicted RBP15.53■□□□□ 0.08
VPS35-202ENST00000561713 GDPGP1Q6ZNW5 385 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 MOB3CQ70IA8 216 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 FAM185AQ8N0U4 392 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 C17orf50Q8WW18 174 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 TNFRSF14Q92956 283 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 HIST1H2AAQ96QV6 131 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 CNN2Q99439 309 aaKnown RBP15.53■□□□□ 0.08
VPS35-202ENST00000561713 C16orf95Q9H693 158 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 YY1AP1Q9H869 796 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 ZNF222Q9UK12 451 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 PIGLQ9Y2B2 252 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 TET2Q6N021 2002 aaPredicted RBP15.53■□□□□ 0.08
VPS35-202ENST00000561713 NBEAL2Q6ZNJ1 2754 aa15.53■□□□□ 0.08
VPS35-202ENST00000561713 A0A0U1RQV5 110 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 MEIOCA2RUB1 952 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 ACAA1P09110 424 aaPredicted RBP15.52■□□□□ 0.08
VPS35-202ENST00000561713 PSG2P11465 335 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 PAX6P26367 422 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 EPHA2P29317 976 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 C2orf68Q2NKX9 166 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 DHRS7BQ6IAN0 325 aaPredicted RBP15.52■□□□□ 0.08
VPS35-202ENST00000561713 KCTD18Q6PI47 426 aaPredicted RBP15.52■□□□□ 0.08
VPS35-202ENST00000561713 METAP1DQ6UB28 335 aaPredicted RBP15.52■□□□□ 0.08
VPS35-202ENST00000561713 THAP5Q7Z6K1 395 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 PAPD5Q8NDF8 572 aaKnown RBP15.52■□□□□ 0.08
VPS35-202ENST00000561713 AQP3Q92482 292 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 DUS3LQ96G46 650 aaKnown RBP15.52■□□□□ 0.08
VPS35-202ENST00000561713 TEX12Q9BXU0 123 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 MROQ9BYG7 248 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 DNTTIP1Q9H147 329 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 DPAGT1Q9H3H5 408 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 GPR173Q9NS66 373 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 C19orf12Q9NSK7 152 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 VPREB3Q9UKI3 123 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 MAB21L2Q9Y586 359 aa15.52■□□□□ 0.08
VPS35-202ENST00000561713 A6NIN4 97 aa15.51■□□□□ 0.07
VPS35-202ENST00000561713 G3V4G9 280 aa15.51■□□□□ 0.07
VPS35-202ENST00000561713 H3BSH0 61 aa15.51■□□□□ 0.07
VPS35-202ENST00000561713 SYNGR1O43759 233 aa15.51■□□□□ 0.07
VPS35-202ENST00000561713 PAHP00439 452 aa15.51■□□□□ 0.07
VPS35-202ENST00000561713 IGLV3-1P01715 115 aa15.51■□□□□ 0.07
VPS35-202ENST00000561713 TTRP02766 147 aa15.51■□□□□ 0.07
VPS35-202ENST00000561713 EEF1B2P24534 225 aaKnown RBP15.51■□□□□ 0.07
VPS35-202ENST00000561713 RIDAP52758 137 aaKnown RBP15.51■□□□□ 0.07
VPS35-202ENST00000561713 CAPZA1P52907 286 aa15.51■□□□□ 0.07
VPS35-202ENST00000561713 GUCA2AQ02747 115 aa15.51■□□□□ 0.07
VPS35-202ENST00000561713 PTGES3Q15185 160 aaKnown RBP15.51■□□□□ 0.07
VPS35-202ENST00000561713 ZNF829Q3KNS6 432 aaPredicted RBP15.51■□□□□ 0.07
VPS35-202ENST00000561713 CEACAM21Q3KPI0 293 aa15.51■□□□□ 0.07
VPS35-202ENST00000561713 ZNF679Q8IYX0 411 aa15.51■□□□□ 0.07
VPS35-202ENST00000561713 MED30Q96HR3 178 aa15.51■□□□□ 0.07
VPS35-202ENST00000561713 APOL4Q9BPW4 351 aa15.51■□□□□ 0.07
VPS35-202ENST00000561713 NUFIP1Q9UHK0 495 aaKnown RBP15.51■□□□□ 0.07
VPS35-202ENST00000561713 KMT2CQ8NEZ4 4911 aaKnown RBP15.5■□□□□ 0.07
VPS35-202ENST00000561713 BTBD17A6NE02 478 aa15.5■□□□□ 0.07
VPS35-202ENST00000561713 GPR37O15354 613 aa15.5■□□□□ 0.07
VPS35-202ENST00000561713 ANGPTL7O43827 346 aa15.5■□□□□ 0.07
VPS35-202ENST00000561713 SRSF10O75494 262 aaKnown RBP15.5■□□□□ 0.07
VPS35-202ENST00000561713 DNAJC8O75937 253 aaPredicted RBP15.5■□□□□ 0.07
VPS35-202ENST00000561713 CSF1P09603 554 aa15.5■□□□□ 0.07
VPS35-202ENST00000561713 CAV3P56539 151 aa15.5■□□□□ 0.07
VPS35-202ENST00000561713 CXCR4P61073 352 aa15.5■□□□□ 0.07
VPS35-202ENST00000561713 ESRRGP62508 458 aa15.5■□□□□ 0.07
VPS35-202ENST00000561713 ROM1Q03395 351 aa15.5■□□□□ 0.07
VPS35-202ENST00000561713 RIPPLY1Q0D2K3 151 aa15.5■□□□□ 0.07
VPS35-202ENST00000561713 HCP5Q6MZN7 132 aa15.5■□□□□ 0.07
VPS35-202ENST00000561713 ZNF322Q6U7Q0 402 aaPredicted RBP15.5■□□□□ 0.07
VPS35-202ENST00000561713 SLC35F2Q8IXU6 374 aa15.5■□□□□ 0.07
VPS35-202ENST00000561713 TCEANCQ8N8B7 351 aa15.5■□□□□ 0.07
VPS35-202ENST00000561713 BCAS4Q8TDM0 211 aa15.5■□□□□ 0.07
VPS35-202ENST00000561713 UTP4Q969X6 686 aaKnown RBP15.5■□□□□ 0.07
VPS35-202ENST00000561713 CADM1Q9BY67 442 aaKnown RBP15.5■□□□□ 0.07
VPS35-202ENST00000561713 ADGRL4Q9HBW9 690 aa15.5■□□□□ 0.07
VPS35-202ENST00000561713 OR5B21A6NL26 309 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 LOC110117498-PIK3R3F6TDL0 507 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 GSC2O15499 205 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 DHRS3O75911 302 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 APOL3O95236 402 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 PRB2P02812 416 aaPredicted RBP15.49■□□□□ 0.07
VPS35-202ENST00000561713 EGR3Q06889 387 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 BEAN1Q3B7T3 259 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms