RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 PRB2P02812 416 aaPredicted RBP13.29□□□□□ -0.28
CLN3-208ENST00000561505 ALOX5APP20292 161 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 ATP6V1B2P21281 511 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 MAP2K3P46734 347 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 GPM6AP51674 278 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 DLX6P56179 175 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 LOXL3P58215 753 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 GMFBP60983 142 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 GFOD2Q3B7J2 385 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 OXLD1Q5BKU9 147 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 ZBTB37Q5TC79 503 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 OR2T5Q6IEZ7 315 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 DEGS2Q6QHC5 323 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 ACP7Q6ZNF0 438 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 TRPM8Q7Z2W7 1104 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 NDUFA11Q86Y39 141 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 CD177Q8N6Q3 437 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 OR2T29Q8NH02 315 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 CLPTM1LQ96KA5 538 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 NECAP2Q9NVZ3 263 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 KLHDC2Q9Y2U9 406 aa13.29□□□□□ -0.28
CLN3-208ENST00000561505 ARRDC5A6NEK1 342 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 OR5B21A6NL26 309 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 C17orf98A8MV24 154 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 ZNF732B4DXR9 585 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 PRODHO43272 600 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 POU1F1P28069 291 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 GABRA2P47869 451 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 DYNLT3P51808 116 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 CCBE1Q6UXH8 406 aaPredicted RBP13.28□□□□□ -0.28
CLN3-208ENST00000561505 THAP5Q7Z6K1 395 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 CPLX4Q7Z7G2 160 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.28□□□□□ -0.28
CLN3-208ENST00000561505 DYNAPQ8N1N2 210 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 ZNF561Q8N587 486 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 C11orf44Q8N8P7 122 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 POC1AQ8NBT0 407 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 TMEM185AQ8NFB2 350 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 HIST1H2AAQ96QV6 131 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 NIPSNAP1Q9BPW8 284 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 YY1AP1Q9H869 796 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 MED4Q9NPJ6 270 aa13.28□□□□□ -0.28
CLN3-208ENST00000561505 A6NDX4 124 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 ODF3BA8MYP8 253 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 SELENOFO60613 162 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 PAX6P26367 422 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 RPL31P62899 125 aaKnown RBP13.27□□□□□ -0.29
CLN3-208ENST00000561505 TMEM42Q69YG0 159 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 LCN8Q6JVE9 175 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 KCTD8Q6ZWB6 473 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 DEFB107AQ8IZN7 70 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 FAM185AQ8N0U4 392 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 OR4S1Q8NGB4 309 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 THEM6Q8WUY1 208 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 MMP28Q9H239 520 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 HES4Q9HCC6 221 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 ARL8BQ9NVJ2 186 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 FAM206AQ9NX38 181 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 NDE1Q9NXR1 346 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 USE1Q9NZ43 259 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 TAGLN3Q9UI15 199 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 TCF19Q9Y242 345 aa13.27□□□□□ -0.29
CLN3-208ENST00000561505 A0A1W2PPH5 198 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 RFPL4AA6NLU0 287 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 RFPL4AL1F8VTS6 287 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 FBXO24O75426 580 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 RBP4P02753 201 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 PGA5P0DJD9 388 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 CD28P10747 220 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 SLC2A5P22732 501 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 PRDX2P32119 198 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 BMXP51813 675 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 SLC35D3Q5M8T2 416 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 LDLRAD2Q5SZI1 272 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 C16orf89Q6UX73 402 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 CYP2R1Q6VVX0 501 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 Q6ZSR3 168 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 LHFPL4Q7Z7J7 247 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 IQCF1Q8N6M8 205 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 OR11H6Q8NGC7 330 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 TEX47Q8TBZ9 253 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 MALSU1Q96EH3 234 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 FEVQ99581 238 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 OR51V1Q9H2C8 321 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 MUC13Q9H3R2 512 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 REEP1Q9H902 201 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 AURKAIP1Q9NWT8 199 aaPredicted RBP13.26□□□□□ -0.29
CLN3-208ENST00000561505 SAMHD1Q9Y3Z3 626 aaKnown RBP13.26□□□□□ -0.29
CLN3-208ENST00000561505 TBL2Q9Y4P3 447 aaKnown RBP13.26□□□□□ -0.29
CLN3-208ENST00000561505 COL7A1Q02388 2944 aa13.26□□□□□ -0.29
CLN3-208ENST00000561505 hCG_1809904A0A1W2PP81 198 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 A0A1W2PPE2 198 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 A0A1W2PR64 198 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 A0A1W2PRV1 198 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 PRR23D1E9PI22 279 aaPredicted RBP13.25□□□□□ -0.29
CLN3-208ENST00000561505 PRR23D2P0DMB1 279 aaPredicted RBP13.25□□□□□ -0.29
CLN3-208ENST00000561505 VSIG10L2P0DP72 767 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 PAICSP22234 425 aaKnown RBP13.25□□□□□ -0.29
CLN3-208ENST00000561505 MPZP25189 248 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 ERVFRD-1P60508 538 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms