RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 HMGN1P05114 100 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 PRR23D2P0DMB1 279 aaPredicted RBP7.46□□□□□ -1.22
HDDC3-204ENST00000559834 ATP6V1B1P15313 513 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 MAGEA2P43356 314 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 LOXL3P58215 753 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 RPL31P62899 125 aaKnown RBP7.46□□□□□ -1.22
HDDC3-204ENST00000559834 PPP1R8Q12972 351 aaKnown RBP7.46□□□□□ -1.22
HDDC3-204ENST00000559834 FAM98BQ52LJ0 330 aaKnown RBP7.46□□□□□ -1.22
HDDC3-204ENST00000559834 HCP5Q6MZN7 132 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 KRT74Q7RTS7 529 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 THAP5Q7Z6K1 395 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 KRT77Q7Z794 578 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 CALHM1Q8IU99 346 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 ZNF561Q8N587 486 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 C11orf44Q8N8P7 122 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 C17orf50Q8WW18 174 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 HPSE2Q8WWQ2 592 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 RORBQ92753 470 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 SDSLQ96GA7 329 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 LYZL4Q96KX0 146 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 AMELYQ99218 206 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 CDCA4Q9BXL8 241 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 C1orf21Q9H246 121 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 YY1AP1Q9H869 796 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 MED20Q9H944 212 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 USE1Q9NZ43 259 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 LRP12Q9Y561 859 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 U3KQV3 271 aa7.46□□□□□ -1.22
HDDC3-204ENST00000559834 RFPL4AA6NLU0 287 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 RFPL4AL1F8VTS6 287 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 MTRF1O75570 445 aaKnown RBP7.45□□□□□ -1.22
HDDC3-204ENST00000559834 TFF1P04155 84 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 FAHP16930 419 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 PRDX2P32119 198 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 ERVFRD-1P60508 538 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 PSMA6P60900 246 aaKnown RBP7.45□□□□□ -1.22
HDDC3-204ENST00000559834 RIPPLY1Q0D2K3 151 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 SMIM21Q3B7S5 101 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 SLC35D3Q5M8T2 416 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 TMEM200BQ69YZ2 307 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 PLBD1Q6P4A8 553 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 KCTD18Q6PI47 426 aaPredicted RBP7.45□□□□□ -1.22
HDDC3-204ENST00000559834 HAGHLQ6PII5 290 aaPredicted RBP7.45□□□□□ -1.22
HDDC3-204ENST00000559834 CRIP3Q6Q6R5 217 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 DEGS2Q6QHC5 323 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 Q6ZPA2 131 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 MOB3CQ70IA8 216 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 DHFR2Q86XF0 187 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 MKXQ8IYA7 352 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 ARHGAP24Q8N264 748 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 OR4F17Q8NGA8 305 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 OR10G2Q8NGC3 310 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 OR8B12Q8NGG6 310 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 OR2T27Q8NH04 317 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 MRAPQ8TCY5 172 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 GIPC3Q8TF64 312 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 AQP3Q92482 292 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 SGCDQ92629 289 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 OR4F4Q96R69 305 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 FEVQ99581 238 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 NKX3-1Q99801 234 aaPredicted RBP7.45□□□□□ -1.22
HDDC3-204ENST00000559834 NIPSNAP1Q9BPW8 284 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 TEX12Q9BXU0 123 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 MUC13Q9H3R2 512 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 ELL3Q9HB65 397 aaPredicted RBP7.45□□□□□ -1.22
HDDC3-204ENST00000559834 ABCB10Q9NRK6 738 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 C19orf12Q9NSK7 152 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.45□□□□□ -1.22
HDDC3-204ENST00000559834 LAMP5Q9UJQ1 280 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 ZNF222Q9UK12 451 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 PITPNC1Q9UKF7 332 aa7.45□□□□□ -1.22
HDDC3-204ENST00000559834 A0A0U1RQV5 110 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 TMEM269A0A1B0GVZ9 245 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 VGLL3A8MV65 326 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 PLXNB1O43157 2135 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 PRODHO43272 600 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 SELENOFO60613 162 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 FBXO24O75426 580 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 NRASP01111 189 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 PRB2P02812 416 aaPredicted RBP7.44□□□□□ -1.22
HDDC3-204ENST00000559834 ALOX5APP20292 161 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 RPS7P62081 194 aaKnown RBP7.44□□□□□ -1.22
HDDC3-204ENST00000559834 GINS1Q14691 196 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 NSUN5P1Q3KNT7 163 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 CEP78Q5JTW2 689 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 ZBTB37Q5TC79 503 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 LCN1P1Q5VSP4 162 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 HIST2H2BDQ6DRA6 164 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 ACP7Q6ZNF0 438 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 COMMD2Q86X83 199 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 NDUFA11Q86Y39 141 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 ZNF573Q86YE8 665 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 IQCF1Q8N6M8 205 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 RPS4Y2Q8TD47 263 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 R3HDM4Q96D70 268 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 MALSU1Q96EH3 234 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 AJUBAQ96IF1 538 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 MROQ9BYG7 248 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 YIPF3Q9GZM5 350 aa7.44□□□□□ -1.22
HDDC3-204ENST00000559834 PRSS22Q9GZN4 317 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms