RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 C4orf36Q96KX1 117 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 SLC6A7Q99884 636 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 FRRS1LQ9P0K9 344 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 ERVK-18Q9QC07 812 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 ZNF69Q9UC07 566 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 A0A1B0GVI7 797 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 PQLC2LA1A4F0 135 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 TMPRSS2O15393 492 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 SYT7O43581 403 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 MTRF1O75570 445 aaKnown RBP9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 SFTPBP07988 381 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 IGHV4-38-2P0DP08 117 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 FGF12P61328 243 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 ADARB1P78563 741 aaKnown RBP9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 PRB3Q04118 309 aaPredicted RBP9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 IKZF1Q13422 519 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 UBE2V2Q15819 145 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 MICBQ29980 383 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 STUMQ69YW2 141 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 BTN2A1Q7KYR7 527 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 FAM220AQ7Z4H9 259 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 ZNF555Q8NEP9 628 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 OR51A4Q8NGJ6 313 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 ST8SIA4Q92187 359 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 MRI1Q9BV20 369 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 ALG8Q9BVK2 526 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 ABCB9Q9NP78 766 aa9.6□□□□□ -0.87
CCDC88C-208ENST00000554165 IGKV1D-17A0A075B6S4 117 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 IGKV1-27A0A075B6S5 117 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 FAM230AA0A1W2PPH8 454 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 ERICH4A6NGS2 130 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 OR5B21A6NL26 309 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 NDUFA2O43678 99 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 TCF21O43680 179 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 INMTO95050 263 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 IGHA1P01876 353 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 GNAO1P09471 354 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 MUC1P15941 1255 aaPredicted RBP9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 CPT2P23786 658 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 HAAOP46952 286 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 CEBPDP49716 269 aaPredicted RBP9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 DLX1P56177 255 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 ACTC1P68032 377 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 ACTA1P68133 377 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 GALEQ14376 348 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 KCNJ8Q15842 424 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 ARMCX4Q5H9R4 360 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 ZBTB37Q5TC79 503 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 OGFRL1Q5TC84 451 aaPredicted RBP9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 ZNF691Q5VV52 312 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 LAIR2Q6ISS4 152 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 RNF144BQ7Z419 303 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 CALHM1Q8IU99 346 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 OR10Z1Q8NGY1 313 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 ADAT3Q96EY9 351 aaPredicted RBP9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 GAFA1Q96PS6 74 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 C19orf24Q9BVV8 132 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 ELL3Q9HB65 397 aaPredicted RBP9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 ESM1Q9NQ30 184 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 ERVK13-1Q9NX77 482 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 KAAG1Q9UBP8 84 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 DNAJB11Q9UBS4 358 aa9.59□□□□□ -0.87
CCDC88C-208ENST00000554165 IGKV1-9A0A0C4DH69 117 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 ANKRD61A6NGH8 418 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 OR4C45A6NMZ5 311 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 F8VVB4 439 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 F8VWA3 439 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 MPZL2O60487 215 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 FADS2O95864 444 aaKnown RBP9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 PLATP00750 562 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 HTR1AP08908 422 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 LIMS3P0CW19 117 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 LIMS4P0CW20 117 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 PSG2P11465 335 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 GLRA1P23415 457 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 TGM4P49221 684 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 ETV1P50549 477 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 DGUOKQ16854 277 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 FDX2Q6P4F2 183 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 BTNL3Q6UXE8 466 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 DHRSXQ8N5I4 330 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 ANGPTL6Q8NI99 470 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 TMEM158Q8WZ71 300 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 UPRTQ96BW1 309 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 FGGYQ96C11 551 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 Q96MT0 163 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 ZNF48Q96MX3 618 aaPredicted RBP9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 RDH12Q96NR8 316 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 TBX15Q96SF7 602 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 PCGF1Q9BSM1 259 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 ADI1Q9BV57 179 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 TRIM36Q9NQ86 728 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 MRPS18AQ9NVS2 196 aaKnown RBP9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 NLKQ9UBE8 527 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 NUP50Q9UKX7 468 aa9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 RPL36Q9Y3U8 105 aaKnown RBP9.58□□□□□ -0.88
CCDC88C-208ENST00000554165 TENM1Q9UKZ4 2725 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 TRAV40A0A0B4J280 105 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 MDFIC2A0A1B0GVS7 189 aa9.57□□□□□ -0.88
CCDC88C-208ENST00000554165 SNTNA6NMZ2 147 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms