RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 RAD23AP54725 363 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 RGS8P57771 180 aaPredicted RBP2.87□□□□□ -1.95
LIMA1-206ENST00000550611 ERVK-25P63136 954 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 CDK6Q00534 326 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 FMODQ06828 376 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 RPL18Q07020 188 aaKnown RBP2.87□□□□□ -1.95
LIMA1-206ENST00000550611 FADDQ13158 208 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 MAB21L1Q13394 359 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 SGCAQ16586 387 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 DUSP7Q16829 419 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 IZUMO4Q1ZYL8 232 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 RSPO1Q2MKA7 263 aaPredicted RBP2.87□□□□□ -1.95
LIMA1-206ENST00000550611 TTMPQ5BVD1 217 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 CLEC12AQ5QGZ9 265 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 LRIF1Q5T3J3 769 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 TTC33Q6PID6 262 aaPredicted RBP2.87□□□□□ -1.95
LIMA1-206ENST00000550611 ARL9Q6T311 187 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 RBM45Q8IUH3 476 aaKnown RBP2.87□□□□□ -1.95
LIMA1-206ENST00000550611 C10orf67Q8IYJ2 551 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 KIRREL3Q8IZU9 778 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 C10orf53Q8N6V4 93 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 LRRC75AQ8NAA5 344 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 NPEPL1Q8NDH3 523 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 LY6G5BQ8NDX9 201 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 OR8G5Q8NG78 346 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 OR6T1Q8NGN1 323 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 OR13G1Q8NGZ3 307 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 MOSPD2Q8NHP6 518 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 NPRL2Q8WTW4 380 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 UBLCP1Q8WVY7 318 aaPredicted RBP2.87□□□□□ -1.95
LIMA1-206ENST00000550611 TNFRSF14Q92956 283 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 LHX4Q969G2 390 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 ERGIC1Q969X5 290 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 PHF21AQ96BD5 680 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 SAT2Q96F10 170 aaPredicted RBP2.87□□□□□ -1.95
LIMA1-206ENST00000550611 TMEM68Q96MH6 324 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 ZBTB18Q99592 522 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 MCHR1Q99705 422 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 PCGF1Q9BSM1 259 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 ALG12Q9BV10 488 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 TMEM109Q9BVC6 243 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 ROPN1BQ9BZX4 212 aaPredicted RBP2.87□□□□□ -1.95
LIMA1-206ENST00000550611 KCNN2Q9H2S1 579 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 DPAGT1Q9H3H5 408 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 TMEM38AQ9H6F2 299 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 RMND5AQ9H871 391 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 ROPN1Q9HAT0 212 aaPredicted RBP2.87□□□□□ -1.95
LIMA1-206ENST00000550611 CACYBPQ9HB71 228 aaKnown RBP2.87□□□□□ -1.95
LIMA1-206ENST00000550611 INIPQ9NRY2 104 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 ZNRD1Q9P1U0 126 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 CTSZQ9UBR2 303 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 VPREB3Q9UKI3 123 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 FOXJ3Q9UPW0 622 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 SIGLEC9Q9Y336 463 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 N6AMT1Q9Y5N5 214 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 USH1CQ9Y6N9 552 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 SESN1Q9Y6P5 492 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 A0A1W2PQ09 198 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 A0A1W2PRG6 482 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 TRAPPC13A5PLN9 417 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 GMNCA6NCL1 334 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 OR6C6A6NF89 314 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 C12orf71A8MTZ7 269 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 IQCF6A8MYZ5 107 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 C5orf58C9J3I9 102 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 F5H5P2 479 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 BLOC1S5-TXNDC5H3BN57 136 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 M0QX08 132 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 LGALS8O00214 317 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 HDAC3O15379 428 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 XPNPEP2O43895 674 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 SERPINB7O75635 380 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 B3GALNT1O75752 331 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 OR7A10O76100 309 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 ANP32DO95626 131 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 MT-ND1P03886 318 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 HIST1H2ABP04908 130 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 RPSAP08865 295 aaKnown RBP2.86□□□□□ -1.95
LIMA1-206ENST00000550611 IDO1P14902 403 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 MSR1P21757 451 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 BGNP21810 368 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 CD200P41217 278 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 SRP9P49458 86 aaKnown RBP2.86□□□□□ -1.95
LIMA1-206ENST00000550611 DAP3P51398 398 aaKnown RBP2.86□□□□□ -1.95
LIMA1-206ENST00000550611 CRYBA2P53672 197 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 PCBD1P61457 104 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 ARF6P62330 175 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 HIST1H3AP68431 136 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 EMX1Q04741 257 aaPredicted RBP2.86□□□□□ -1.95
LIMA1-206ENST00000550611 STX3Q13277 289 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 SCARB2Q14108 478 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 MPPED2Q15777 294 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 TNFAIP8L3Q5GJ75 292 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 FAM76BQ5HYJ3 339 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 CXorf66Q5JRM2 361 aaPredicted RBP2.86□□□□□ -1.95
LIMA1-206ENST00000550611 PAGE3Q5JUK9 113 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 CEP85LQ5SZL2 805 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 GCNT6Q5T4J0 391 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 HIST2H3PS2Q5TEC6 136 aa2.86□□□□□ -1.95
LIMA1-206ENST00000550611 ASPHD1Q5U4P2 390 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms