RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 RAET1LQ5VY80 246 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 OR5T2Q8NGG2 359 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 OR10Z1Q8NGY1 313 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 ADAMTS17Q8TE56 1095 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 DYRK2Q92630 601 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 NABP1Q96AH0 204 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 FAAP24Q9BTP7 215 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 NELFAQ9H3P2 528 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 LIME1Q9H400 295 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 TAF9BQ9HBM6 251 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 PLEK2Q9NYT0 353 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 MLXQ9UH92 298 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 PRELID3BQ9Y3B1 194 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 WDFY4Q6ZS81 3184 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 CEP192Q8TEP8 1941 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 MED6O75586 246 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 IGLV3-1P01715 115 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 CD63P08962 238 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 TMEM225BP0DP42 221 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 HKR1P10072 659 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 CCL3P10147 92 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 PVALBP20472 110 aaPredicted RBP13.82□□□□□ -0.2
LDLR-204ENST00000545707 STK11Q15831 433 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 TAF9Q16594 264 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 SP6Q3SY56 376 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 LINC00518Q8N0U6 118 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 SLC39A7Q92504 469 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 EMG1Q92979 244 aaKnown RBP13.82□□□□□ -0.2
LDLR-204ENST00000545707 FBXO17Q96EF6 278 aa13.82□□□□□ -0.2
LDLR-204ENST00000545707 C14orf166Q9Y224 244 aaKnown RBP13.82□□□□□ -0.2
LDLR-204ENST00000545707 LY6G6EA0A0G2JKS1 128 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 FAM221AA4D161 298 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 M0R135 149 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 SCGB1D2O95969 90 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 IFNA2P01563 188 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 PATE4P0C8F1 98 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 ACKR3P25106 362 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 RBMXP38159 391 aaKnown RBP13.81□□□□□ -0.2
LDLR-204ENST00000545707 RPL35P42766 123 aaKnown RBP13.81□□□□□ -0.2
LDLR-204ENST00000545707 AKR1D1P51857 326 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 H3F3AP84243 136 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 FLI1Q01543 452 aaPredicted RBP13.81□□□□□ -0.2
LDLR-204ENST00000545707 AKIRIN2Q53H80 203 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 PPP1R3BQ86XI6 285 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 SLC25A43Q8WUT9 341 aaPredicted RBP13.81□□□□□ -0.2
LDLR-204ENST00000545707 HAS2Q92819 552 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 MRPL24Q96A35 216 aaKnown RBP13.81□□□□□ -0.2
LDLR-204ENST00000545707 ZNF799Q96GE5 643 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 LSM5Q9Y4Y9 91 aaKnown RBP13.81□□□□□ -0.2
LDLR-204ENST00000545707 U3KQA8 63 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 V9GYS6 101 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 CACNA1EQ15878 2313 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 FAM230AA0A1W2PPH8 454 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 C9JQL5 133 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 NPIPA2E9PIF3 369 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 NPIPA3F8WFD2 350 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 THBS4P35443 961 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 EIF1P41567 113 aaKnown RBP13.81□□□□□ -0.2
LDLR-204ENST00000545707 MTCP1P56278 107 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 LSM6P62312 80 aaKnown RBP13.81□□□□□ -0.2
LDLR-204ENST00000545707 C10orf91Q5T1B1 145 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 TOMM40LQ969M1 308 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 SGK3Q96BR1 496 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 CHST5Q9GZS9 411 aa13.81□□□□□ -0.2
LDLR-204ENST00000545707 CARHSP1Q9Y2V2 147 aaKnown RBP13.81□□□□□ -0.2
LDLR-204ENST00000545707 FIGNL2A6NMB9 653 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 CPT2P23786 658 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 CTSSP25774 331 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 PDCD1Q15116 288 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 SULF2Q8IWU5 870 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 RHBDD1Q8TEB9 315 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 NRIP2Q9BQI9 281 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 NDRG3Q9UGV2 375 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 SERPINE3A8MV23 424 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 TOX3O15405 576 aaPredicted RBP13.8□□□□□ -0.2
LDLR-204ENST00000545707 DHHO43323 396 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 H2AFB1P0C5Y9 115 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 RPL12P30050 165 aaKnown RBP13.8□□□□□ -0.2
LDLR-204ENST00000545707 TSPO2Q5TGU0 170 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 RPUSD3Q6P087 351 aaKnown RBP13.8□□□□□ -0.2
LDLR-204ENST00000545707 ETV3LQ6ZN32 361 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 SPAG16Q8N0X2 631 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 BSCL2Q96G97 398 aaPredicted RBP13.8□□□□□ -0.2
LDLR-204ENST00000545707 CNTNAP3Q9BZ76 1288 aa13.8□□□□□ -0.2
LDLR-204ENST00000545707 MRPS17Q9Y2R5 130 aaKnown RBP13.8□□□□□ -0.2
LDLR-204ENST00000545707 A0A0U1RQV5 110 aa13.79□□□□□ -0.2
LDLR-204ENST00000545707 TP53I11O14683 189 aa13.79□□□□□ -0.2
LDLR-204ENST00000545707 TNFSF11O14788 317 aa13.79□□□□□ -0.2
LDLR-204ENST00000545707 ALDH3B1P43353 468 aa13.79□□□□□ -0.2
LDLR-204ENST00000545707 HGFACQ04756 655 aa13.79□□□□□ -0.2
LDLR-204ENST00000545707 PCOLCEQ15113 449 aa13.79□□□□□ -0.2
LDLR-204ENST00000545707 FAM189A2Q15884 450 aa13.79□□□□□ -0.2
LDLR-204ENST00000545707 GGNBP1Q5YKI7 109 aa13.79□□□□□ -0.2
LDLR-204ENST00000545707 SLC16A14Q7RTX9 510 aa13.79□□□□□ -0.2
LDLR-204ENST00000545707 ZFP82Q8N141 532 aa13.79□□□□□ -0.2
LDLR-204ENST00000545707 BATF2Q8N1L9 274 aa13.79□□□□□ -0.2
LDLR-204ENST00000545707 OR9K2Q8NGE7 335 aa13.79□□□□□ -0.2
LDLR-204ENST00000545707 SMIM8Q96KF7 97 aa13.79□□□□□ -0.2
LDLR-204ENST00000545707 TM2D1Q9BX74 207 aa13.79□□□□□ -0.2
LDLR-204ENST00000545707 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.79□□□□□ -0.28e-6■■■■□ 26.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms