RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 A0A1W2PRS3 328 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 KIR3DP1A8MWS1 328 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 B4GALT1P15291 398 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 CBR1P16152 277 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 HLA-GP17693 338 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 OR11L1Q8NGX0 322 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 MR1Q95460 341 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 RHOFQ9HBH0 211 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 TAF9BQ9HBM6 251 aa13.16□□□□□ -0.3
USP28-214ENST00000545540 PATE3B3GLJ2 98 aa13.15□□□□□ -0.3
USP28-214ENST00000545540 M0R135 149 aa13.15□□□□□ -0.3
USP28-214ENST00000545540 HSPB6O14558 160 aa13.15□□□□□ -0.3
USP28-214ENST00000545540 GSTP1P09211 210 aaKnown RBP13.15□□□□□ -0.3
USP28-214ENST00000545540 ENDOGQ14249 297 aaKnown RBP13.15□□□□□ -0.3
USP28-214ENST00000545540 ARL11Q969Q4 196 aa13.15□□□□□ -0.3
USP28-214ENST00000545540 ERGIC1Q969X5 290 aa13.15□□□□□ -0.3
USP28-214ENST00000545540 ZNF799Q96GE5 643 aa13.15□□□□□ -0.3
USP28-214ENST00000545540 NECAB3Q96P71 396 aaPredicted RBP13.15□□□□□ -0.3
USP28-214ENST00000545540 UQCC1Q9NVA1 299 aa13.15□□□□□ -0.3
USP28-214ENST00000545540 PURGQ9UJV8 347 aaKnown RBP13.15□□□□□ -0.3
USP28-214ENST00000545540 PCDHGA1Q9Y5H4 931 aa13.15□□□□□ -0.3
USP28-214ENST00000545540 R4GN57 208 aa13.15□□□□□ -0.3
USP28-214ENST00000545540 A0A1W2PNV4 684 aa13.15□□□□□ -0.3
USP28-214ENST00000545540 MTRF1O75570 445 aaKnown RBP13.15□□□□□ -0.3
USP28-214ENST00000545540 CFIP05156 583 aa13.15□□□□□ -0.3
USP28-214ENST00000545540 RPS2P15880 293 aaKnown RBP13.15□□□□□ -0.3
USP28-214ENST00000545540 TMEM156Q8N614 296 aa13.15□□□□□ -0.3
USP28-214ENST00000545540 NMES1Q9C002 83 aa13.15□□□□□ -0.3
USP28-214ENST00000545540 NME2P1O60361 137 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 LCATP04180 440 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 OR8U9P0C7N5 309 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 CCNOP22674 350 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 IL32P24001 234 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 RBMXP38159 391 aaKnown RBP13.14□□□□□ -0.31
USP28-214ENST00000545540 PABPC1L2AQ5JQF8 200 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 SVBPQ8N300 66 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 OR5L1Q8NGL2 311 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 OR8U1Q8NH10 309 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 MARS2Q96GW9 593 aaKnown RBP13.14□□□□□ -0.31
USP28-214ENST00000545540 TGIF2Q9GZN2 237 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 RCL1Q9Y2P8 373 aaKnown RBP13.14□□□□□ -0.31
USP28-214ENST00000545540 SNAPC5O75971 98 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 MSR1P21757 451 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 PRSS54Q6PEW0 395 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 SLC23A3Q6PIS1 610 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 CCDC36Q8IYA8 594 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 SGK3Q96BR1 496 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 AKR1E2Q96JD6 320 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 ULBP2Q9BZM5 246 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 OSGIN2Q9Y236 505 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 IGKV1-27A0A075B6S5 117 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 AQP7P3A6NL99 342 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 CCL2P13500 99 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 ZNF708P17019 499 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 FPR2P25090 351 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 PPT1P50897 306 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 STK11Q15831 433 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 RABEPKQ7Z6M1 372 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 SULF2Q8IWU5 870 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 ARRDC1Q8N5I2 433 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 SUMF1Q8NBK3 374 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 SLC22A8Q8TCC7 542 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 SRXN1Q9BYN0 137 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 CRLF2Q9HC73 371 aa13.14□□□□□ -0.31
USP28-214ENST00000545540 ZNF107Q9UII5 783 aaPredicted RBP13.14□□□□□ -0.31
USP28-214ENST00000545540 CEP192Q8TEP8 1941 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 A0A0J9YW62 118 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 GEMIN2O14893 280 aaKnown RBP13.13□□□□□ -0.31
USP28-214ENST00000545540 CSTBP04080 98 aaKnown RBP13.13□□□□□ -0.31
USP28-214ENST00000545540 TAS2R31P59538 309 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 LYZL2Q7Z4W2 148 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 SLC30A7Q8NEW0 376 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 FGFBP3Q8TAT2 258 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 SECTM1Q8WVN6 248 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 ISOC2Q96AB3 205 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 PHYHIPLQ96FC7 376 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 C2orf50Q96LR7 162 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 OCSTAMPQ9BR26 566 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 FBXL17Q9UF56 701 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 C14orf166Q9Y224 244 aaKnown RBP13.13□□□□□ -0.31
USP28-214ENST00000545540 AMDHD2Q9Y303 409 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 F8VVB4 439 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 F8VWA3 439 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 FGF16O43320 207 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 FCGR2CP31995 323 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 TMEM33P57088 247 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 ZNF616Q08AN1 781 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 PDZK1IP1Q13113 114 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 VAX1Q5SQQ9 334 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 MEX3BQ6ZN04 569 aaKnown RBP13.13□□□□□ -0.31
USP28-214ENST00000545540 SHDQ96IW2 340 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 SLC5A7Q9GZV3 580 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.13□□□□□ -0.31
USP28-214ENST00000545540 LPAR3Q9UBY5 353 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 IGLV3-12A0A075B6K2 115 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 TLX3O43711 291 aaPredicted RBP13.13□□□□□ -0.31
USP28-214ENST00000545540 OR5H8P0DN80 308 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 HKR1P10072 659 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 CD79AP11912 226 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 PIGPP57054 158 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 109.8 ms