RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 EIF3GO75821 320 aaKnown RBP eCLIP11.86□□□□□ -0.51
PTPN1-202ENST00000541713 DUS4LO95620 317 aaKnown RBP11.86□□□□□ -0.51
PTPN1-202ENST00000541713 ZNF32P17041 273 aa11.86□□□□□ -0.51
PTPN1-202ENST00000541713 SLC25A47Q6Q0C1 308 aa11.86□□□□□ -0.51
PTPN1-202ENST00000541713 DOK3Q7L591 496 aa11.86□□□□□ -0.51
PTPN1-202ENST00000541713 FBXL14Q8N1E6 418 aa11.86□□□□□ -0.51
PTPN1-202ENST00000541713 HSD17B11Q8NBQ5 300 aa11.86□□□□□ -0.51
PTPN1-202ENST00000541713 MRPL24Q96A35 216 aaKnown RBP11.86□□□□□ -0.51
PTPN1-202ENST00000541713 TLNRD1Q9H1K6 362 aa11.86□□□□□ -0.51
PTPN1-202ENST00000541713 ESRP2Q9H6T0 727 aaKnown RBP11.86□□□□□ -0.51
PTPN1-202ENST00000541713 PLA2G3Q9NZ20 509 aa11.86□□□□□ -0.51
PTPN1-202ENST00000541713 HS3ST3B1Q9Y662 390 aa11.86□□□□□ -0.51
PTPN1-202ENST00000541713 ADAMTS9Q9P2N4 1935 aa11.86□□□□□ -0.51
PTPN1-202ENST00000541713 DAOP14920 347 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 CD80P33681 288 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 SLC35A1P78382 337 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 HGFACQ04756 655 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 ZP4Q12836 540 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 ABCA11PQ4W5N1 156 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 H3F3CQ6NXT2 135 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 SULF2Q8IWU5 870 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 ESX1Q8N693 406 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 GJC3Q8NFK1 279 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 OR14K1Q8NGZ2 314 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 MARC2Q969Z3 335 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 BSCL2Q96G97 398 aaPredicted RBP11.85□□□□□ -0.51
PTPN1-202ENST00000541713 SHDQ96IW2 340 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 PECRQ9BY49 303 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 NKX6-2Q9C056 277 aaPredicted RBP11.85□□□□□ -0.51
PTPN1-202ENST00000541713 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.85□□□□□ -0.51
PTPN1-202ENST00000541713 K7ESF4 209 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 NME2P1O60361 137 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 IGHMP01871 453 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 CBR1P16152 277 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 SSR4P51571 173 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 P2RY4P51582 365 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 SUPT4H1P63272 117 aaKnown RBP11.85□□□□□ -0.51
PTPN1-202ENST00000541713 TLE1Q04724 770 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 CEACAM16Q2WEN9 425 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 BAP18Q8IXM2 172 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 PUSL1Q8N0Z8 303 aaKnown RBP11.85□□□□□ -0.51
PTPN1-202ENST00000541713 OR9K2Q8NGE7 335 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 OR6X1Q8NH79 312 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 SGK3Q96BR1 496 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 MAGT1Q9H0U3 335 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 PISDQ9UG56 409 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 SGCEO43556 437 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 OR2F2O95006 317 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 UMODP07911 640 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 GDF1P27539 372 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 MECP2P51608 486 aaKnown RBP11.85□□□□□ -0.51
PTPN1-202ENST00000541713 OR2F1Q13607 317 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 DEGS2Q6QHC5 323 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 HOGA1Q86XE5 327 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 OR52H1Q8NGJ2 320 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 C1orf147Q96MC9 270 aaPredicted RBP11.85□□□□□ -0.51
PTPN1-202ENST00000541713 CMSS1Q9BQ75 279 aaKnown RBP11.85□□□□□ -0.51
PTPN1-202ENST00000541713 RTBDNQ9BSG5 229 aaPredicted RBP11.85□□□□□ -0.51
PTPN1-202ENST00000541713 ALX4Q9H161 411 aaPredicted RBP11.85□□□□□ -0.51
PTPN1-202ENST00000541713 CHRDQ9H2X0 955 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 PNRC2Q9NPJ4 139 aaKnown RBP11.85□□□□□ -0.51
PTPN1-202ENST00000541713 MLXQ9UH92 298 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 ATMQ13315 3056 aa11.85□□□□□ -0.51
PTPN1-202ENST00000541713 AQP7P3A6NL99 342 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 HSPB2A8KAH6 182 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 GP1BAP07359 652 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 CARD18P57730 90 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 HSPB2Q16082 182 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 PEG10Q86TG7 708 aaKnown RBP11.84□□□□□ -0.51
PTPN1-202ENST00000541713 SAP25Q8TEE9 199 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 DNASE2BQ8WZ79 361 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 BORCS8Q96FH0 119 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 CALHM2Q9HA72 323 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 PCNX1Q96RV3 2341 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 LY6G6EA0A0G2JKS1 128 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 A0A1W2PR80 420 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 PRH1P02810 166 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 OR5H8P0DN80 308 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 RAB6AP20340 208 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 PTGER4P35408 488 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 PPT1P50897 306 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 FOXG1P55316 489 aaPredicted RBP11.84□□□□□ -0.51
PTPN1-202ENST00000541713 SCAND1P57086 179 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 ENDOGQ14249 297 aaKnown RBP11.84□□□□□ -0.51
PTPN1-202ENST00000541713 PCOLCEQ15113 449 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 MPPED2Q15777 294 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 RSPO1Q2MKA7 263 aaPredicted RBP11.84□□□□□ -0.51
PTPN1-202ENST00000541713 C5orf46Q6UWT4 87 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 AAED1Q7RTV5 226 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 BCL2L14Q9BZR8 327 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 U3KQA8 63 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 ZFHX2Q9C0A1 2572 aaPredicted RBP11.84□□□□□ -0.51
PTPN1-202ENST00000541713 ZIC3O60481 467 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 TPT1P13693 172 aaKnown RBP11.84□□□□□ -0.51
PTPN1-202ENST00000541713 CLINT1Q14677 625 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 PLCXD3Q63HM9 321 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 SLC22A25Q6T423 547 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 GPR137CQ8N3F9 429 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 EDAQ92838 391 aa11.84□□□□□ -0.51
PTPN1-202ENST00000541713 UQCC2Q9BRT2 126 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms