RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 TECTBQ96PL2 329 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 HIST1H2AAQ96QV6 131 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 CCL13Q99616 98 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 MRPS18AQ9NVS2 196 aaKnown RBP11.75□□□□□ -0.53
USP28-209ENST00000540925 ZNF222Q9UK12 451 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 GTF2A1LQ9UNN4 478 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 AKR7A2O43488 359 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 MPZL2O60487 215 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 ECDO95905 644 aaPredicted RBP11.74□□□□□ -0.53
USP28-209ENST00000540925 IGHA1P01876 353 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 LIPFP07098 398 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 DBTP11182 482 aaKnown RBP11.74□□□□□ -0.53
USP28-209ENST00000540925 MPZP25189 248 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 ATP6V1E1P36543 226 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 FGF12P61328 243 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 PLCXD3Q63HM9 321 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 KCTD8Q6ZWB6 473 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 BTN2A1Q7KYR7 527 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 EGFL6Q8IUX8 553 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 BCL6BQ8N143 479 aaPredicted RBP11.74□□□□□ -0.53
USP28-209ENST00000540925 ACBD7Q8N6N7 88 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.74□□□□□ -0.53
USP28-209ENST00000540925 CCDC54Q8NEL0 328 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 C22orf15Q8WYQ4 148 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 DMRTB1Q96MA1 342 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 ZNF48Q96MX3 618 aaPredicted RBP11.74□□□□□ -0.53
USP28-209ENST00000540925 GAFA1Q96PS6 74 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 SIRPDQ9H106 197 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 GPR173Q9NS66 373 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 GNG8Q9UK08 70 aa11.74□□□□□ -0.53
USP28-209ENST00000540925 IGKV1D-17A0A075B6S4 117 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 ZNF879B4DU55 563 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 NOS1APO75052 506 aaPredicted RBP11.73□□□□□ -0.53
USP28-209ENST00000540925 WBP4O75554 376 aaKnown RBP11.73□□□□□ -0.53
USP28-209ENST00000540925 RGS9O75916 674 aaPredicted RBP11.73□□□□□ -0.53
USP28-209ENST00000540925 BAG2O95816 211 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 ACAA1P09110 424 aaPredicted RBP11.73□□□□□ -0.53
USP28-209ENST00000540925 PGA5P0DJD9 388 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 SELLP14151 372 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 FPR2P25090 351 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 OR12D2P58182 307 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 NANOS3P60323 173 aaKnown RBP11.73□□□□□ -0.53
USP28-209ENST00000540925 HAGHLQ6PII5 290 aaPredicted RBP11.73□□□□□ -0.53
USP28-209ENST00000540925 SLC36A1Q7Z2H8 476 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 BPIFB2Q8N4F0 458 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 POC1AQ8NBT0 407 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 OR5T2Q8NGG2 359 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 OR2G2Q8NGZ5 317 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 C8orf46Q8TAG6 207 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 FAM216AQ8WUB2 273 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 PELI1Q96FA3 418 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 C1orf147Q96MC9 270 aaPredicted RBP11.73□□□□□ -0.53
USP28-209ENST00000540925 TBX15Q96SF7 602 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 PRDM13Q9H4Q3 707 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 SMPD3Q9NY59 655 aaPredicted RBP11.73□□□□□ -0.53
USP28-209ENST00000540925 FRRS1LQ9P0K9 344 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 NLKQ9UBE8 527 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 RPUSD1Q9UJJ7 312 aaKnown RBP11.73□□□□□ -0.53
USP28-209ENST00000540925 MYRFQ9Y2G1 1151 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 PCDHGB1Q9Y5G3 927 aa11.73□□□□□ -0.53
USP28-209ENST00000540925 A0A1B0GVI7 797 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 LOC107986453A0A1B0GWG9 222 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 DAPL1A0PJW8 107 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 A6NIN4 97 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 SNTNA6NMZ2 147 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 OR2AT4A6NND4 320 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 J3QT63 122 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 GPR37O15354 613 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 SIGLEC5O15389 551 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 SYT7O43581 403 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 SYNGR1O43759 233 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 TFF1P04155 84 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 ISG15P05161 165 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 SFTPBP07988 381 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 UBCP0CG48 685 aaKnown RBP11.72□□□□□ -0.53
USP28-209ENST00000540925 PSG2P11465 335 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 CCR9P51686 369 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 ERVK11-1P61568 191 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 UBE2V2Q15819 145 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 DGUOKQ16854 277 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 ODF4Q2M2E3 257 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 FAM220AQ7Z4H9 259 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 ZNF573Q86YE8 665 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 CALHM1Q8IU99 346 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 RDH10Q8IZV5 341 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 SIGLECL1Q8N7X8 197 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 PNLDC1Q8NA58 520 aaKnown RBP11.72□□□□□ -0.53
USP28-209ENST00000540925 ZNF671Q8TAW3 534 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 STMN2Q93045 179 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 C10orf35Q96D05 121 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 SDSLQ96GA7 329 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 Q96MT0 163 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 WDFY2Q96P53 400 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 JMJD8Q96S16 334 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 NRIP2Q9BQI9 281 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 CHST5Q9GZS9 411 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 HES4Q9HCC6 221 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 SNTG1Q9NSN8 517 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 RASL12Q9NYN1 266 aa11.72□□□□□ -0.53
USP28-209ENST00000540925 SOX21Q9Y651 276 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms