RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 TEX30Q5JUR7 227 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 TMEM200BQ69YZ2 307 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 CENPVQ7Z7K6 275 aaPredicted RBP9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 SLC15A3Q8IY34 581 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 OR52H1Q8NGJ2 320 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 OR2T4Q8NH00 348 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 OR5P3Q8WZ94 311 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 SDSLQ96GA7 329 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 RNF170Q96K19 258 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 GPR61Q9BZJ8 451 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 ABCB9Q9NP78 766 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 CD300AQ9UGN4 299 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 ZNF222Q9UK12 451 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 TSSC4Q9Y5U2 329 aaPredicted RBP9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 U3KQK5 164 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 ZNF850A8MQ14 1090 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 ZNF593O00488 134 aaPredicted RBP9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 CLIC3O95833 236 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 APOC1P02654 83 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 DCTDP32321 178 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 ENTPD1P49961 510 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 DYNLT3P51808 116 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 ERVFRD-1P60508 538 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 RPL31P62899 125 aaKnown RBP9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 PRDX4Q13162 271 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 TMEM95Q3KNT9 176 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 SPATS1Q496A3 300 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 SAMD4BQ5PRF9 694 aaKnown RBP9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 LYPD4Q6UWN0 246 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 KCTD8Q6ZWB6 473 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 FAM57BQ71RH2 274 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 PRSS45Q7RTY3 260 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 OR51L1Q8NGJ5 315 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 DPF1Q92782 380 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 FOXRED1Q96CU9 486 aaPredicted RBP9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 C7orf34Q96L11 122 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 DHRS1Q96LJ7 313 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 YY1AP1Q9H869 796 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 USE1Q9NZ43 259 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 ZNF319Q9P2F9 582 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 ABCD2Q9UBJ2 740 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 TBL2Q9Y4P3 447 aaKnown RBP9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 COMMD3-BMI1R4GMX3 469 aa9.34□□□□□ -0.91
CLSTN3-209ENST00000539982 DHRS12A0PJE2 317 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 NME4O00746 187 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 DIRAS1O95057 198 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 CST4P01036 141 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 HSD11B1P28845 292 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 FMO3P31513 532 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 CAPZA1P52907 286 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 SMIM11AP58511 58 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 SSX2Q16385 188 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 RNF144BQ7Z419 303 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 CALHM1Q8IU99 346 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 TIGD4Q8IY51 512 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 FAM86B1Q8N7N1 296 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 ZNF511Q8NB15 262 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 PIGCQ92535 297 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 MYDGFQ969H8 173 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 FAM162AQ96A26 154 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 FGF23Q9GZV9 251 aaPredicted RBP9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 OR10A2Q9H208 303 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 RGCCQ9H4X1 137 aa9.33□□□□□ -0.92
CLSTN3-209ENST00000539982 H3BUI4 141 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 ARG1P05089 322 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 HSD17B1P14061 328 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 CCL3L1P16619 93 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 GSSP48637 474 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 ZNF121P58317 390 aaPredicted RBP9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 GFOD2Q3B7J2 385 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 KLHL22Q53GT1 634 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 LDLRAD2Q5SZI1 272 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 C1orf146Q5VVC0 180 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 ZNF782Q6ZMW2 699 aaPredicted RBP9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 THAP5Q7Z6K1 395 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 LINC00482Q8N8I6 264 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 OR4M1Q8NGD0 313 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 OR2T27Q8NH04 317 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 ZNF671Q8TAW3 534 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 CCDC124Q96CT7 223 aaKnown RBP9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 HIST1H2AAQ96QV6 131 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 CHID1Q9BWS9 393 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 OR51I2Q9H344 312 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 RASL12Q9NYN1 266 aa9.32□□□□□ -0.92
CLSTN3-209ENST00000539982 RFPL4AA6NLU0 287 aa9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 C17orf98A8MV24 154 aa9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 ODF3BA8MYP8 253 aa9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 RFPL4AL1F8VTS6 287 aa9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 MTRF1O75570 445 aaKnown RBP9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 GADD45GO95257 159 aa9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 NCK1P16333 377 aa9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 ACKR3P25106 362 aa9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 IFNGR2P38484 337 aa9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 GPM6AP51674 278 aa9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 OR12D2P58182 307 aa9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 EIF2B1Q14232 305 aaKnown RBP9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 ZDHHC23Q8IYP9 409 aa9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 ZNF561Q8N587 486 aa9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 CD177Q8N6Q3 437 aa9.31□□□□□ -0.92
CLSTN3-209ENST00000539982 RNF148Q8N7C7 305 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms