RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 RASL12Q9NYN1 266 aa11□□□□□ -0.65
SS18-204ENST00000539244 SAMHD1Q9Y3Z3 626 aaKnown RBP11□□□□□ -0.65
SS18-204ENST00000539244 A0A0U1RQV5 110 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 A0A1W2PPH5 198 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 FAM90A8PA6NJQ4 464 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 OR5B21A6NL26 309 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 ZNF732B4DXR9 585 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 SNX3O60493 162 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 FBXO24O75426 580 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 VSIG10L2P0DP72 767 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 PAICSP22234 425 aaKnown RBP10.99□□□□□ -0.65
SS18-204ENST00000539244 PAX6P26367 422 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 MAP2K3P46734 347 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 LOXL3P58215 753 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 RPL31P62899 125 aaKnown RBP10.99□□□□□ -0.65
SS18-204ENST00000539244 EMX1Q04741 257 aaPredicted RBP10.99□□□□□ -0.65
SS18-204ENST00000539244 GK3PQ14409 553 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 HSP90B2PQ58FF3 399 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 OXLD1Q5BKU9 147 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 OR2T5Q6IEZ7 315 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 C16orf89Q6UX73 402 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 CYP2R1Q6VVX0 501 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 NDUFA11Q86Y39 141 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 OR4S1Q8NGB4 309 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 OR5A2Q8NGI9 324 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 OR2T29Q8NH02 315 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 MRAPQ8TCY5 172 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 THEM6Q8WUY1 208 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 OR51V1Q9H2C8 321 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 YY1AP1Q9H869 796 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 REEP1Q9H902 201 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 MED4Q9NPJ6 270 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 NECAP2Q9NVZ3 263 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 NDE1Q9NXR1 346 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 USE1Q9NZ43 259 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 U3KQV3 271 aa10.99□□□□□ -0.65
SS18-204ENST00000539244 hCG_1809904A0A1W2PP81 198 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 A0A1W2PPE2 198 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 A0A1W2PR64 198 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 A0A1W2PRV1 198 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 ACOD1A6NK06 481 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 ADARB2-AS1A8MUL3 147 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 PRODHO43272 600 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 SELENOFO60613 162 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 IGLV3-1P01715 115 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 ATP6V1B1P15313 513 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 BMXP51813 675 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 ERVFRD-1P60508 538 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 CEP78Q5JTW2 689 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 ZBTB37Q5TC79 503 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 TMEM200BQ69YZ2 307 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 ACP7Q6ZNF0 438 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 TRPM8Q7Z2W7 1104 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 CALHM1Q8IU99 346 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 DEFB107AQ8IZN7 70 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 ZNF561Q8N587 486 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 IQCF1Q8N6M8 205 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 CD177Q8N6Q3 437 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 POC1AQ8NBT0 407 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 OR10G2Q8NGC3 310 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 FAM81AQ8TBF8 368 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 MMP28Q9H239 520 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 FAM206AQ9NX38 181 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 TAGLN3Q9UI15 199 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 TCF19Q9Y242 345 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 KLHDC2Q9Y2U9 406 aa10.98□□□□□ -0.65
SS18-204ENST00000539244 ARRDC5A6NEK1 342 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 RFPL4AA6NLU0 287 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 PRR23D1E9PI22 279 aaPredicted RBP10.97□□□□□ -0.65
SS18-204ENST00000539244 RFPL4AL1F8VTS6 287 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 NOS1APO75052 506 aaPredicted RBP10.97□□□□□ -0.65
SS18-204ENST00000539244 PRR23D2P0DMB1 279 aaPredicted RBP10.97□□□□□ -0.65
SS18-204ENST00000539244 CD28P10747 220 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 ALOX5APP20292 161 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 CAPZA1P52907 286 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 LGALS4P56470 323 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 SMIM21Q3B7S5 101 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 SLC35D3Q5M8T2 416 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 LCN8Q6JVE9 175 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 PLBD1Q6P4A8 553 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 HAGHLQ6PII5 290 aaPredicted RBP10.97□□□□□ -0.65
SS18-204ENST00000539244 DEGS2Q6QHC5 323 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 OR4F17Q8NGA8 305 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 OTULINQ96BN8 352 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 OR4F4Q96R69 305 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 FEVQ99581 238 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 WNT10AQ9GZT5 417 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 MUC13Q9H3R2 512 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 ARL8BQ9NVJ2 186 aa10.97□□□□□ -0.65
SS18-204ENST00000539244 AURKAIP1Q9NWT8 199 aaPredicted RBP10.97□□□□□ -0.65
SS18-204ENST00000539244 TBL2Q9Y4P3 447 aaKnown RBP10.97□□□□□ -0.65
SS18-204ENST00000539244 DSCAML1Q8TD84 2053 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 A6NDX4 124 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 C17orf98A8MV24 154 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 H3BN98 237 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 SLC1A7O00341 560 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 PGA5P0DJD9 388 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 CCL3L1P16619 93 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 PRDX2P32119 198 aa10.96□□□□□ -0.65
SS18-204ENST00000539244 DLX6P56179 175 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms