RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 YY1AP1Q9H869 796 aa6.9□□□□□ -1.3
USP28-203ENST00000537490 FAM206AQ9NX38 181 aa6.9□□□□□ -1.3
USP28-203ENST00000537490 LAMP5Q9UJQ1 280 aa6.9□□□□□ -1.3
USP28-203ENST00000537490 SIGLEC9Q9Y336 463 aa6.9□□□□□ -1.3
USP28-203ENST00000537490 SF3B6Q9Y3B4 125 aaKnown RBP6.9□□□□□ -1.3
USP28-203ENST00000537490 A0A0U1RQV5 110 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 TMEM269A0A1B0GVZ9 245 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 CCDC182A6NF36 153 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 ANKRD61A6NGH8 418 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 H0YAE9 185 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 H3BUX3 64 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 GNGT2O14610 69 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 IGLV3-1P01715 115 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 MRPL3P09001 348 aaKnown RBP6.89□□□□□ -1.31
USP28-203ENST00000537490 CALB2P22676 271 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 ERVFRD-1P60508 538 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 APOFQ13790 326 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 BLMHQ13867 455 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 LY6EQ16553 131 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 CEACAM21Q3KPI0 293 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 NCR3LG1Q68D85 454 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 HAGHLQ6PII5 290 aaPredicted RBP6.89□□□□□ -1.31
USP28-203ENST00000537490 TRPM8Q7Z2W7 1104 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 MKXQ8IYA7 352 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 FAM185AQ8N0U4 392 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 C11orf42Q8N5U0 333 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 PAPD5Q8NDF8 572 aaKnown RBP6.89□□□□□ -1.31
USP28-203ENST00000537490 BEND2Q8NDZ0 799 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 TMEM185AQ8NFB2 350 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 OR5A2Q8NGI9 324 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 ZNF671Q8TAW3 534 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 FAM81AQ8TBF8 368 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 OR51E1Q8TCB6 317 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 SDSLQ96GA7 329 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 ZNF488Q96MN9 340 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 TEAD3Q99594 435 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 SSX3Q99909 188 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 THTPAQ9BU02 230 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 YIPF3Q9GZM5 350 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 PBOV1Q9GZY1 135 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 MEGF9Q9H1U4 602 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 GPR84Q9NQS5 396 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 C19orf12Q9NSK7 152 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 TVP23BQ9NYZ1 205 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 FBLN5Q9UBX5 448 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 COPS3Q9UNS2 423 aa6.89□□□□□ -1.31
USP28-203ENST00000537490 NOTCH1P46531 2555 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 TRBV23-1A0A0A0MS06 115 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 A0A0G2JK05 382 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 MEGF11A6BM72 1044 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 ACOD1A6NK06 481 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 OR5B21A6NL26 309 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 RFPL4AA6NLU0 287 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 AQP12BA6NM10 295 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 RFPL4AL1F8VTS6 287 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 GSC2O15499 205 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 SYNGR1O43759 233 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 ANGPTL7O43827 346 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 E2F6O75461 281 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 MTRF1O75570 445 aaKnown RBP6.88□□□□□ -1.31
USP28-203ENST00000537490 CSF1P09603 554 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 ANXA8P13928 327 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 ATP6V1B1P15313 513 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 FAHP16930 419 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 GABRA5P31644 462 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 CEBPDP49716 269 aaPredicted RBP6.88□□□□□ -1.31
USP28-203ENST00000537490 CAPZA1P52907 286 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 RIPPLY1Q0D2K3 151 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 HERPUD1Q15011 391 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 SNAPC1Q16533 368 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 PLCXD3Q63HM9 321 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 TMEM200BQ69YZ2 307 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 KCTD18Q6PI47 426 aaPredicted RBP6.88□□□□□ -1.31
USP28-203ENST00000537490 CRIP3Q6Q6R5 217 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 DEGS2Q6QHC5 323 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 ACP7Q6ZNF0 438 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 THAP5Q7Z6K1 395 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 COMMD2Q86X83 199 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 AQP12AQ8IXF9 295 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 CD177Q8N6Q3 437 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 OR51G2Q8NGK0 314 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 OR5D13Q8NGL4 314 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 OR8B4Q96RC9 309 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 TTTY10Q9BZA0 68 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 ZNF556Q9HAH1 456 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 SLC25A19Q9HC21 320 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 FOXJ3Q9UPW0 622 aa6.88□□□□□ -1.31
USP28-203ENST00000537490 MAGEB4O15481 346 aaPredicted RBP6.87□□□□□ -1.31
USP28-203ENST00000537490 ZNF254O75437 659 aa6.87□□□□□ -1.31
USP28-203ENST00000537490 SRSF10O75494 262 aaKnown RBP6.87□□□□□ -1.31
USP28-203ENST00000537490 NRASP01111 189 aa6.87□□□□□ -1.31
USP28-203ENST00000537490 TTRP02766 147 aa6.87□□□□□ -1.31
USP28-203ENST00000537490 CCL3L1P16619 93 aa6.87□□□□□ -1.31
USP28-203ENST00000537490 PRDX2P32119 198 aa6.87□□□□□ -1.31
USP28-203ENST00000537490 KIR2DS4P43632 304 aa6.87□□□□□ -1.31
USP28-203ENST00000537490 RIDAP52758 137 aaKnown RBP6.87□□□□□ -1.31
USP28-203ENST00000537490 EFNB2P52799 333 aa6.87□□□□□ -1.31
USP28-203ENST00000537490 CRISP1P54107 249 aa6.87□□□□□ -1.31
USP28-203ENST00000537490 CBX1P83916 185 aa6.87□□□□□ -1.31
USP28-203ENST00000537490 ROM1Q03395 351 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms