RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	TRMT1L	Q7Z2T5	733 aa	Known RBP	4.87	□□□□□ -1.63
CD44-231	ENST00000531110	SLC35E3	Q7Z769	313 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	SCD5	Q86SK9	330 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	ACOT1	Q86TX2	421 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	TMPRSS12	Q86WS5	348 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	APOBEC3F	Q8IUX4	373 aa	Known RBP	4.87	□□□□□ -1.63
CD44-231	ENST00000531110	C4orf19	Q8IY42	314 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	CMTM8	Q8IZV2	173 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	LRRC75A-AS1	Q8N1F1	130 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	RNF149	Q8NC42	400 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	GJC3	Q8NFK1	279 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	TSTD1	Q8NFU3	115 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	OR5AU1	Q8NGC0	362 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	OR52L1	Q8NGH7	329 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	OR52E1	Q8NGJ3	308 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	OR1L6	Q8NGR2	347 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	OR10X1	Q8NGY0	326 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	OR5AK2	Q8NH90	309 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	OR5K2	Q8NHB8	316 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	LYPD6B	Q8NI32	183 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	NUDCD2	Q8WVJ2	157 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	TMEM239	Q8WW34	195 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	HIST1H2BH	Q93079	126 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	C16orf58	Q96GQ5	468 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	PANX1	Q96RD7	426 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	DDO	Q99489	341 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	MGLL	Q99685	303 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	HIST1H2BN	Q99877	126 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	HIST1H2BM	Q99879	126 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	SLC25A33	Q9BSK2	321 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	SLC25A31	Q9H0C2	315 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	METTL17	Q9H7H0	456 aa	Predicted RBP	4.87	□□□□□ -1.63
CD44-231	ENST00000531110	TMEM27	Q9HBJ8	222 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	APOBEC3G	Q9HC16	384 aa	Known RBP	4.87	□□□□□ -1.63
CD44-231	ENST00000531110	RAB9B	Q9NP90	201 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	RAB22A	Q9UL26	194 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	PAM16	Q9Y3D7	125 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	AK6	Q9Y3D8	172 aa	Known RBP	4.87	□□□□□ -1.63
CD44-231	ENST00000531110	SNX10	Q9Y5X0	201 aa		4.87	□□□□□ -1.63
CD44-231	ENST00000531110	ELOVL7	A1L3X0	281 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	C7orf77	A4D0Y5	90 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	OR5B21	A6NL26	309 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	VSTM2B	A6NLU5	285 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110		F8VVB4	439 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110		F8VWA3	439 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	NME4	O00746	187 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	SDHD	O14521	159 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	TNFSF14	O43557	240 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	LAT	O43561	262 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	KLK8	O60259	260 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	CREBL2	O60519	120 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-231	ENST00000531110	NME6	O75414	186 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-231	ENST00000531110	RAB36	O95755	333 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	HBZ	P02008	142 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	ZNF19	P17023	458 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	EPOR	P19235	508 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	SAT1	P21673	171 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	CYP2F1	P24903	491 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	AZGP1	P25311	298 aa	Known RBP	4.86	□□□□□ -1.63
CD44-231	ENST00000531110	HOXC9	P31274	260 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	KDELR2	P33947	212 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	BDKRB1	P46663	353 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	OR3A2	P47893	321 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	AKR1C2	P52895	323 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	LBX1	P52954	281 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	F2RL1	P55085	397 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	NDUFA6	P56556	154 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	TAS2R19	P59542	299 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	SNRPD1	P62314	119 aa	Known RBP	4.86	□□□□□ -1.63
CD44-231	ENST00000531110	CRMP1	Q14194	572 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	PSG5	Q15238	335 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	RNPS1	Q15287	305 aa	Known RBP	4.86	□□□□□ -1.63
CD44-231	ENST00000531110	ACKR1	Q16570	336 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	SGCB	Q16585	318 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	TMEM183B	Q1AE95	376 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	AMZ1	Q400G9	498 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	ZNF585B	Q52M93	769 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	ASPRV1	Q53RT3	343 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	SLC39A4	Q6P5W5	647 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	CD200R1L	Q6Q8B3	271 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	TMEM220	Q6QAJ8	160 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	GLDN	Q6ZMI3	551 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-231	ENST00000531110	MEPCE	Q7L2J0	689 aa	Known RBP	4.86	□□□□□ -1.63
CD44-231	ENST00000531110	ZNF546	Q86UE3	836 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	NEIL3	Q8TAT5	605 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	CPB2	Q96IY4	423 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	BTF3L4	Q96K17	158 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	KCTD7	Q96MP8	289 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	CACNG6	Q9BXT2	260 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	BANF2	Q9H503	90 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	LRTM1	Q9HBL6	345 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	ZNF160	Q9HCG1	818 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	TAS2R14	Q9NYV8	317 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	RPS6KB2	Q9UBS0	482 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	MRM2	Q9UI43	246 aa	Known RBP	4.86	□□□□□ -1.63
CD44-231	ENST00000531110	CD84	Q9UIB8	345 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	EMCN	Q9ULC0	261 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	FLVCR2	Q9UPI3	526 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	ABCA3	Q99758	1704 aa		4.86	□□□□□ -1.63
CD44-231	ENST00000531110	ZFC3H1	O60293	1989 aa	Known RBP	4.85	□□□□□ -1.63

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