RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 USF3Q68DE3 2245 aa3.64□□□□□ -1.83
CD44-226ENST00000527889 UTP20O75691 2785 aaKnown RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 HRNRQ86YZ3 2850 aaPredicted RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 LOC100509620A0A075B734 347 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 A0A087WV48 116 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 A0A0A0MQY5 61 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 TRGV5A0A0B4J1U4 118 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 TRAV17A0A0B4J275 112 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 CD8B2A6NJW9 211 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 PRSS44E7EML9 344 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 NPIPA2E9PIF3 369 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ZNF670-ZNF695F2Z2N8 137 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 F8WDY8 70 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 NPIPA3F8WFD2 350 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 H7C1Q1 480 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 CCRL2O00421 344 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ZNF593O00488 134 aaPredicted RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 HS3ST1O14792 307 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 TFECO14948 347 aaPredicted RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 EIF1BO60739 113 aaKnown RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 KHDRBS3O75525 346 aaKnown RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 CEACAM4O75871 244 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 SNAPINO95295 136 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 IGHG1P01857 330 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 PGA4P0DJD7 388 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 PGA3P0DJD8 388 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 RPA2P15927 270 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ZNF182P17025 639 aaPredicted RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 CELP19835 753 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 FKBP2P26885 142 aaKnown RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 CRYBB2P43320 205 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 SERPINB10P48595 397 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 RGS6P49758 472 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 SELENOPP49908 381 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ACTC1P68032 377 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ACTA1P68133 377 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 H3F3AP84243 136 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 GALK2Q01415 458 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 SLC3A1Q07837 685 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 PDZK1IP1Q13113 114 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 INSL4Q14641 139 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 SLC10A1Q14973 349 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 SSX2Q16385 188 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ZNF239Q16600 458 aaKnown RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 SPANXN2Q5MJ10 180 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 PHYHD1Q5SRE7 291 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 PDSS1Q5T2R2 415 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 PYHIN1Q6K0P9 492 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ARL9Q6T311 187 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 IGFL2Q6UWQ7 119 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 TMPRSS11AQ6ZMR5 421 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 DCDC5Q6ZRR9 648 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 CREB3L2Q70SY1 520 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 FCRLAQ7L513 359 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 SLC16A9Q7RTY1 509 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 CDC20BQ86Y33 519 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 PAQR4Q8N4S7 273 aaPredicted RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 YIPF7Q8N8F6 280 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ZIC4Q8N9L1 334 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ZFP62Q8NB50 900 aaPredicted RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 OR52N4Q8NGI2 321 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 OR13C5Q8NGS8 318 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 OR6N1Q8NGY5 312 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ZNF596Q8TC21 504 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ABHD3Q8WU67 409 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 THEM6Q8WUY1 208 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 UFD1Q92890 307 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ZHX1-C8orf76Q96EF9 292 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 SLC25A44Q96H78 314 aaPredicted RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 ADGRG7Q96K78 797 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 Q96MF0 132 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ZNF385AQ96PM9 386 aaKnown RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 OR2M2Q96R28 347 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 DHRS9Q9BPW9 319 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 TMED9Q9BVK6 235 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 MRPL13Q9BYD1 178 aaKnown RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 DCSTAMPQ9H295 470 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 HRH4Q9H3N8 390 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 MARCH7Q9H992 704 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 INPP5EQ9NRR6 644 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ACOXLQ9NUZ1 547 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 NDUFB11Q9NX14 153 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 PTTG2Q9NZH5 202 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 SPRR3Q9UBC9 169 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 PEF1Q9UBV8 284 aaKnown RBP3.63□□□□□ -1.83
CD44-226ENST00000527889 GNG8Q9UK08 70 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 IKZF2Q9UKS7 526 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 STUB1Q9UNE7 303 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 MOKQ9UQ07 419 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 RASD1Q9Y272 281 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 GRIP1Q9Y3R0 1128 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 FLVCR1Q9Y5Y0 555 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 FKBP7Q9Y680 259 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 ATRQ13535 2644 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 MTORP42345 2549 aa3.63□□□□□ -1.83
CD44-226ENST00000527889 A0A0B4J293 547 aa3.62□□□□□ -1.83
CD44-226ENST00000527889 TRBV2A0A0J9YWF9 115 aa3.62□□□□□ -1.83
CD44-226ENST00000527889 A0A1B0GTH9 108 aa3.62□□□□□ -1.83
CD44-226ENST00000527889 LOC102725191A0A1B0GVB3 256 aa3.62□□□□□ -1.83
CD44-226ENST00000527889 FUOMA2VDF0 154 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms