RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 FAM185AQ8N0U4 392 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 NECAP1Q8NC96 275 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 CADM4Q8NFZ8 388 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 FBLIM1Q8WUP2 373 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 RGS13O14921 159 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 IGKV1D-16P01601 117 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 FUT6P51993 359 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 RPS4XP62701 263 aaKnown RBP11.28□□□□□ -0.6
USP53-209ENST00000514665 ADPRHL1Q8NDY3 354 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 KCNE4Q8WWG9 221 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 HGDQ93099 445 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 NXF2Q9GZY0 626 aaKnown RBP11.28□□□□□ -0.6
USP53-209ENST00000514665 NUDT19A8MXV4 375 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 SH2D1BO14796 132 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 DHRS3O75911 302 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 HLA-DOBP13765 273 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 FPR2P25090 351 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 RPS16P62249 146 aaKnown RBP11.28□□□□□ -0.6
USP53-209ENST00000514665 SKP2Q13309 424 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 DRAM2Q6UX65 266 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 TSEN54Q7Z6J9 526 aaKnown RBP11.28□□□□□ -0.6
USP53-209ENST00000514665 CDC20BQ86Y33 519 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 PTPMT1Q8WUK0 201 aaPredicted RBP11.28□□□□□ -0.6
USP53-209ENST00000514665 CHAC2Q8WUX2 184 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 SPSB1Q96BD6 273 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 RAB39BQ96DA2 213 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 SCMH1Q96GD3 660 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 CXorf58Q96LI9 332 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 ESRP2Q9H6T0 727 aaKnown RBP11.28□□□□□ -0.6
USP53-209ENST00000514665 MRPL22Q9NWU5 206 aaKnown RBP11.28□□□□□ -0.6
USP53-209ENST00000514665 OPN4Q9UHM6 478 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 PCOLCE2Q9UKZ9 415 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 RCL1Q9Y2P8 373 aaKnown RBP11.28□□□□□ -0.6
USP53-209ENST00000514665 GREB1LQ9C091 1923 aaPredicted RBP11.28□□□□□ -0.6
USP53-209ENST00000514665 TO15178 435 aa11.27□□□□□ -0.6
USP53-209ENST00000514665 SOCS1O15524 211 aa11.27□□□□□ -0.6
USP53-209ENST00000514665 ARR3P36575 388 aa11.27□□□□□ -0.6
USP53-209ENST00000514665 LIMK1P53667 647 aa11.27□□□□□ -0.6
USP53-209ENST00000514665 SLC35G3Q8N808 338 aa11.27□□□□□ -0.6
USP53-209ENST00000514665 BPIFCQ8NFQ6 507 aa11.27□□□□□ -0.6
USP53-209ENST00000514665 P4HTMQ9NXG6 502 aa11.27□□□□□ -0.6
USP53-209ENST00000514665 PLXNB2O15031 1838 aa11.27□□□□□ -0.6
USP53-209ENST00000514665 C4orf51C9J302 202 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 RNASEK-C17orf49H0YIS7 233 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 PTP4A3O75365 173 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 ONECUT2O95948 504 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 GP1BAP07359 652 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 DAZAP1Q96EP5 407 aaKnown RBP11.27□□□□□ -0.61
USP53-209ENST00000514665 TRIB1Q96RU8 372 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 ARRDC1-AS1Q9H2J1 176 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 PPP5D1E7EU14 171 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 CCL2P13500 99 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 CLRN3Q8NCR9 226 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 OR8B12Q8NGG6 310 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 ANGPTL6Q8NI99 470 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 ASB13Q8WXK3 278 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 TGIF2Q9GZN2 237 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 CHST6Q9GZX3 395 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 OSGIN2Q9Y236 505 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 OR2M5A3KFT3 312 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 TNFSF15O95150 251 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 DUS4LO95620 317 aaKnown RBP11.27□□□□□ -0.61
USP53-209ENST00000514665 KLF9Q13886 244 aaPredicted RBP11.27□□□□□ -0.61
USP53-209ENST00000514665 RHBDD2Q6NTF9 364 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 NAA40Q86UY6 237 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 SCCPDHQ8NBX0 429 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 ASB5Q8WWX0 329 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 ST6GALNAC2Q9UJ37 374 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 KLHDC2Q9Y2U9 406 aa11.27□□□□□ -0.61
USP53-209ENST00000514665 A0A1W2PR80 420 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 KRASP01116 189 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 OR8U8P0C7N1 319 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 GABRA1P14867 456 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 ZP3P21754 424 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 LIMS1P48059 325 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 SCAND1P57086 179 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 MIDNQ504T8 468 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 MRGPREQ86SM8 312 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 OR11G2Q8NGC1 345 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 OR5M8Q8NGP6 311 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 TVP23CQ96ET8 276 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 RASL10BQ96S79 203 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 SMOC1Q9H4F8 434 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 STRAPQ9Y3F4 350 aaKnown RBP11.26□□□□□ -0.61
USP53-209ENST00000514665 SIPA1L1O43166 1804 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 CYB5BO43169 146 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 GSTZ1O43708 216 aaPredicted RBP11.26□□□□□ -0.61
USP53-209ENST00000514665 CDC14BO60729 498 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 SFT2D2O95562 160 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 MGST1P10620 155 aaKnown RBP11.26□□□□□ -0.61
USP53-209ENST00000514665 PABPC1L2AQ5JQF8 200 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 Q7L0L9 218 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 OR10P1Q8NGE3 313 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 DSPPQ9NZW4 1301 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 GALNSP34059 522 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 MLF1P58340 268 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 MGAT2Q10469 447 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 TSPO2Q5TGU0 170 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 ZNF787Q6DD87 383 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 OR2T2Q6IF00 324 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms