RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 MTCL1Q9Y4B5 1905 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 WDR90Q96KV7 1748 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 NUPR1O60356 82 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 GZMHP20718 246 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 HINT1P49773 126 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 SUCLG1P53597 346 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 ARL14EPQ8N8R7 260 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 ZNF738Q8NE65 137 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 TXN2Q99757 166 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 AIF1LQ9BQI0 150 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 C20orf144Q9BQM9 153 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 RTBDNQ9BSG5 229 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 ZNF319Q9P2F9 582 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 APOBEC3BQ9UH17 382 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 A0A1B0GW64 132 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 IFNA21P01568 189 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 TLE1Q04724 770 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 FBLN7Q53RD9 439 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 AGBL4Q5VU57 503 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 WFDC8Q8IUA0 241 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 SCARF2Q96GP6 870 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 REEP6Q96HR9 211 aa10.66□□□□□ -0.7
LIMCH1-213ENST00000511496 HSPB1P04792 205 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 FOLR1P15328 257 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 DNASE1L1P49184 302 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 REEP5Q00765 189 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 MLC1Q15049 377 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 EIPR1Q53HC9 387 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 LINC01590Q5TEZ4 76 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 FCRL6Q6DN72 434 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 ZNF793Q6ZN11 406 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 LHFPL4Q7Z7J7 247 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 CALHM1Q8IU99 346 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 OR4D6Q8NGJ1 314 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 MRPL24Q96A35 216 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 SUSD3Q96L08 255 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 WDR76Q9H967 626 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 YLPM1P49750 1951 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 DNAJC25-GNG10A0A024R161 153 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 A0A1W2PR48 441 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 DDAH2O95865 285 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 CDKN2AP42771 156 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 CDCP2Q5VXM1 449 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 PTCRAQ6ISU1 281 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 FAM166AQ6J272 317 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 TMEM64Q6YI46 380 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 ADAMTS18Q8TE60 1221 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 TNFRSF14Q92956 283 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 AMELYQ99218 206 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 ELOVL3Q9HB03 270 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 P4HTMQ9NXG6 502 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 EHFQ9NZC4 300 aa10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 COL4A4P53420 1690 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-213ENST00000511496 LYPD3O95274 346 aa10.65□□□□□ -0.71
LIMCH1-213ENST00000511496 HLA-DQA2P01906 255 aa10.65□□□□□ -0.71
LIMCH1-213ENST00000511496 CTSBP07858 339 aa10.65□□□□□ -0.71
LIMCH1-213ENST00000511496 OCIAD2Q56VL3 154 aa10.65□□□□□ -0.71
LIMCH1-213ENST00000511496 ALG10BQ5I7T1 473 aa10.65□□□□□ -0.71
LIMCH1-213ENST00000511496 MCEMP1Q8IX19 187 aa10.65□□□□□ -0.71
LIMCH1-213ENST00000511496 MFSD9Q8NBP5 474 aa10.65□□□□□ -0.71
LIMCH1-213ENST00000511496 APH1AQ96BI3 265 aa10.65□□□□□ -0.71
LIMCH1-213ENST00000511496 C4orf45Q96LM5 186 aa10.65□□□□□ -0.71
LIMCH1-213ENST00000511496 OR5B12Q96R08 314 aa10.65□□□□□ -0.71
LIMCH1-213ENST00000511496 RBKSQ9H477 322 aa10.65□□□□□ -0.71
LIMCH1-213ENST00000511496 MRPS28Q9Y2Q9 187 aaKnown RBP10.65□□□□□ -0.71
LIMCH1-213ENST00000511496 FANCMQ8IYD8 2048 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 A0A1B0GWA3 101 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 FAM230AA0A1W2PPH8 454 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 STC2O76061 302 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 GOSR1O95249 250 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 HOXB2P14652 356 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 ATP6V0CP27449 155 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 CNN1P51911 297 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 MLF1P58340 268 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 IL24Q13007 206 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 POM121L1PQ3SYA9 428 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 CTXN3Q4LDR2 81 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 PHF19Q5T6S3 580 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 COX15Q7KZN9 410 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 C16orf82Q7Z2V1 217 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 HSD11B1LQ7Z5J1 315 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 THRSPQ92748 146 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 LOXL4Q96JB6 756 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 ST6GALNAC5Q9BVH7 336 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 TMEM9BQ9NQ34 198 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 ZNF581Q9P0T4 197 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 EP400Q96L91 3159 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 A0A1W2PNV4 684 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 E5RGE8 158 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 ABHD16AO95870 558 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 CDK3Q00526 305 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 PRAMEF20Q5VT98 475 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 Q6ZN92 141 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 NKAIN3Q8N8D7 197 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 CXorf40AQ8TE69 158 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 TMEM170AQ8WVE7 144 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 PATZ1Q9HBE1 687 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 C1orf123Q9NWV4 160 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 NSG2Q9Y328 171 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 RNF115Q9Y4L5 304 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms