RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 WDR13Q9H1Z4 485 aa13.27□□□□□ -0.29
VIM-208ENST00000497849 VCXQ9H320 206 aa13.27□□□□□ -0.29
VIM-208ENST00000497849 OR52D1Q9H346 318 aa13.27□□□□□ -0.29
VIM-208ENST00000497849 ELL3Q9HB65 397 aaPredicted RBP13.27□□□□□ -0.29
VIM-208ENST00000497849 SRA1Q9HD15 236 aaKnown RBP13.27□□□□□ -0.29
VIM-208ENST00000497849 HAO2Q9NYQ3 351 aa13.27□□□□□ -0.29
VIM-208ENST00000497849 ZNF391Q9UJN7 358 aa13.27□□□□□ -0.29
VIM-208ENST00000497849 LYSTQ99698 3801 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 A6NDX4 124 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 VGLL3A8MV65 326 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 H0YAE9 185 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 CDIPTO14735 213 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 TXNDC12O95881 172 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 NDUFB7P17568 137 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 CAV3P56539 151 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 GMFBP60983 142 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 BLCAPP62952 87 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 GK3PQ14409 553 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 CASC10Q5T4H9 136 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 FAHD1Q6P587 224 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 DNM1P34Q6PK57 102 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 SMARCD3Q6STE5 483 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 ZBTB49Q6ZSB9 765 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 RASSF6Q6ZTQ3 369 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 TMEM219Q86XT9 240 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 ZDHHC13Q8IUH4 622 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 MKXQ8IYA7 352 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 OR2AJ1Q8NGZ0 328 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 OR8S1Q8NH09 359 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 FANK1Q8TC84 345 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 CIB1Q99828 191 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 PPP1R3EQ9H7J1 279 aa13.26□□□□□ -0.29
VIM-208ENST00000497849 GAR1Q9NY12 217 aaKnown RBP13.26□□□□□ -0.29
VIM-208ENST00000497849 TRBV23-1A0A0A0MS06 115 aa13.25□□□□□ -0.29
VIM-208ENST00000497849 ANXA8P13928 327 aa13.25□□□□□ -0.29
VIM-208ENST00000497849 POU1F1P28069 291 aa13.25□□□□□ -0.29
VIM-208ENST00000497849 OTX1P32242 354 aaPredicted RBP13.25□□□□□ -0.29
VIM-208ENST00000497849 NAA10P41227 235 aaPredicted RBP13.25□□□□□ -0.29
VIM-208ENST00000497849 PLA1AQ53H76 456 aa13.25□□□□□ -0.29
VIM-208ENST00000497849 LHFPL4Q7Z7J7 247 aa13.25□□□□□ -0.29
VIM-208ENST00000497849 ANGPTL6Q8NI99 470 aa13.25□□□□□ -0.29
VIM-208ENST00000497849 SPTSSAQ969W0 71 aa13.25□□□□□ -0.29
VIM-208ENST00000497849 SLC29A1Q99808 456 aa13.25□□□□□ -0.29
VIM-208ENST00000497849 IFT27Q9BW83 186 aa13.25□□□□□ -0.29
VIM-208ENST00000497849 TSSK6Q9BXA6 273 aa13.25□□□□□ -0.29
VIM-208ENST00000497849 NDEL1Q9GZM8 345 aa13.25□□□□□ -0.29
VIM-208ENST00000497849 TLNRD1Q9H1K6 362 aa13.25□□□□□ -0.29
VIM-208ENST00000497849 C8orf4Q9NR00 106 aa13.25□□□□□ -0.29
VIM-208ENST00000497849 CDH10Q9Y6N8 788 aa13.25□□□□□ -0.29
VIM-208ENST00000497849 ARRDC5A6NEK1 342 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 NKX6-3A6NJ46 265 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 SIGLEC5O15389 551 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 SYNGR1O43759 233 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 VDAC2P45880 294 aaPredicted RBP13.24□□□□□ -0.29
VIM-208ENST00000497849 SLC36A3Q495N2 470 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 NKAPLQ5M9Q1 402 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 SLC35F1Q5T1Q4 408 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 CD300LDQ6UXZ3 194 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 CBR4Q8N4T8 237 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 C11orf42Q8N5U0 333 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 IQCF1Q8N6M8 205 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 PACRGLQ8N7B6 248 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 OR4Q3Q8NH05 313 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 MED30Q96HR3 178 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 ERMAPQ96PL5 475 aaPredicted RBP13.24□□□□□ -0.29
VIM-208ENST00000497849 GABARAPL1Q9H0R8 117 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 ZNF556Q9HAH1 456 aa13.24□□□□□ -0.29
VIM-208ENST00000497849 MRPL22Q9NWU5 206 aaKnown RBP13.24□□□□□ -0.29
VIM-208ENST00000497849 FAM90A8PA6NJQ4 464 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 ANKRD30BLA7E2S9 258 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 ACAA1P09110 424 aaPredicted RBP13.23□□□□□ -0.29
VIM-208ENST00000497849 SLC2A1P11166 492 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 SLC6A6P31641 620 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 POLR2IP36954 125 aaKnown RBP13.23□□□□□ -0.29
VIM-208ENST00000497849 RPS6KA3P51812 740 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 DCTN2Q13561 401 aaKnown RBP13.23□□□□□ -0.29
VIM-208ENST00000497849 TMEM236Q5W0B7 351 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 DRAM2Q6UX65 266 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 IZUMO2Q6UXV1 221 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 DPY19L2P2Q6ZN68 376 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 ZBTB46Q86UZ6 589 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 LINC00482Q8N8I6 264 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 SPSB4Q96A44 273 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 NMNAT3Q96T66 252 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 OSBPL10Q9BXB5 764 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 PAPOLBQ9NRJ5 636 aaKnown RBP13.23□□□□□ -0.29
VIM-208ENST00000497849 TBC1D23Q9NUY8 699 aa13.23□□□□□ -0.29
VIM-208ENST00000497849 TSSC4Q9Y5U2 329 aaPredicted RBP13.23□□□□□ -0.29
VIM-208ENST00000497849 TCRBV4S1A1TA0A5B7 111 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 H0YJX3 145 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 H3BN98 237 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 EI24O14681 340 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 CHRM2P08172 466 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 OSMP13725 252 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 PAICSP22234 425 aaKnown RBP13.22□□□□□ -0.29
VIM-208ENST00000497849 DDOSTP39656 456 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 RPS27P42677 84 aaKnown RBP13.22□□□□□ -0.29
VIM-208ENST00000497849 ERVFRD-1P60508 538 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 GINS1Q14691 196 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 ZIK1Q3SY52 487 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms