RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 IFITM3Q01628 133 aa18.51■□□□□ 0.55
SMC4-221ENST00000489573 SLC22A6Q4U2R8 563 aa18.51■□□□□ 0.55
SMC4-221ENST00000489573 OR8S1Q8NH09 359 aa18.51■□□□□ 0.55
SMC4-221ENST00000489573 TMEM171Q8WVE6 324 aa18.51■□□□□ 0.55
SMC4-221ENST00000489573 ABHD1Q96SE0 405 aa18.51■□□□□ 0.55
SMC4-221ENST00000489573 MICU1Q9BPX6 476 aa18.51■□□□□ 0.55
SMC4-221ENST00000489573 ADAT1Q9BUB4 502 aaKnown RBP18.51■□□□□ 0.55
SMC4-221ENST00000489573 MRPS7Q9Y2R9 242 aaKnown RBP18.51■□□□□ 0.55
SMC4-221ENST00000489573 VGLL3A8MV65 326 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 XRCC3O43542 346 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 CDC14BO60729 498 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 KDM4BO94953 1096 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 MNDAP41218 407 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 GNG3P63215 75 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 TFF3Q07654 80 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 PDZK1IP1Q13113 114 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 SNTB1Q13884 538 aaKnown RBP18.5■□□□□ 0.55
SMC4-221ENST00000489573 MSMPQ1L6U9 139 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 VHLLQ6RSH7 139 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 Q8N402 240 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 ZNF808Q8N4W9 903 aaPredicted RBP18.5■□□□□ 0.55
SMC4-221ENST00000489573 PXT1Q8NFP0 134 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 LINC01560Q8TB33 94 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 GAL3ST1Q99999 423 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 RTL8AQ9BWD3 113 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 SLC22A4Q9H015 551 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 METTL9Q9H1A3 318 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 ELL3Q9HB65 397 aaPredicted RBP18.5■□□□□ 0.55
SMC4-221ENST00000489573 TMEM100Q9NV29 134 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 C14orf119Q9NWQ9 140 aa18.5■□□□□ 0.55
SMC4-221ENST00000489573 METTL21EPA6NDL7 271 aa18.49■□□□□ 0.55
SMC4-221ENST00000489573 ANGPTL7O43827 346 aa18.49■□□□□ 0.55
SMC4-221ENST00000489573 ZG16O60844 167 aa18.49■□□□□ 0.55
SMC4-221ENST00000489573 CRTAPO75718 401 aaPredicted RBP18.49■□□□□ 0.55
SMC4-221ENST00000489573 TPPPO94811 219 aa18.49■□□□□ 0.55
SMC4-221ENST00000489573 MPIG6BO95866 241 aa18.49■□□□□ 0.55
SMC4-221ENST00000489573 TAS2R20P59543 309 aa18.49■□□□□ 0.55
SMC4-221ENST00000489573 BAK1Q16611 211 aa18.49■□□□□ 0.55
SMC4-221ENST00000489573 SLC22A25Q6T423 547 aa18.49■□□□□ 0.55
SMC4-221ENST00000489573 ASCL4Q6XD76 172 aa18.49■□□□□ 0.55
SMC4-221ENST00000489573 CALHM1Q8IU99 346 aa18.49■□□□□ 0.55
SMC4-221ENST00000489573 TMEM104Q8NE00 496 aa18.49■□□□□ 0.55
SMC4-221ENST00000489573 ITLN2Q8WWU7 325 aaPredicted RBP18.49■□□□□ 0.55
SMC4-221ENST00000489573 TMEM59Q9BXS4 323 aa18.49■□□□□ 0.55
SMC4-221ENST00000489573 ESRP2Q9H6T0 727 aaKnown RBP18.49■□□□□ 0.55
SMC4-221ENST00000489573 A0A0A6YYH2 397 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 A0A1W2PP11 408 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 A6NJ64 397 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 CLDN14O95500 239 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 CSF3P09919 207 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 IL7P13232 177 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 SERPINA2P20848 420 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 HAAOP46952 286 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 PTH2RP49190 550 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 KLF3P57682 345 aaPredicted RBP18.48■□□□□ 0.55
SMC4-221ENST00000489573 OR8G1Q15617 311 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 NCMAPQ5T1S8 102 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 STEAP3Q658P3 488 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 CDH24Q86UP0 819 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 LYSMD2Q8IV50 215 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 ZNF611Q8N823 705 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 ZSCAN4Q8NAM6 433 aaPredicted RBP18.48■□□□□ 0.55
SMC4-221ENST00000489573 OR10K1Q8NGX5 313 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 C15orf40Q8WUR7 153 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 BANF2Q9H503 90 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 BAHCC1Q9P281 2608 aa18.48■□□□□ 0.55
SMC4-221ENST00000489573 CTDSPLO15194 276 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 SCGNO76038 276 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 IGHV3-13P01766 116 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 GPR176Q14439 515 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 RSU1Q15404 277 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 FAM189A2Q15884 450 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 RAB12Q6IQ22 244 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 LRP11Q86VZ4 500 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 ZNF573Q86YE8 665 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 ZNF843Q8N446 348 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 URM1Q9BTM9 101 aaKnown RBP18.47■□□□□ 0.55
SMC4-221ENST00000489573 LPAR5Q9H1C0 372 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 IL36GQ9NZH8 169 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 DUSP13Q9UII6 198 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 NBASA2RRP1 2371 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 IGLV3-9A0A075B6K5 115 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 IGKV1-12A0A0C4DH73 117 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP18.47■□□□□ 0.55
SMC4-221ENST00000489573 TUBAL3A6NHL2 446 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 ZNF780AO75290 641 aaPredicted RBP18.47■□□□□ 0.55
SMC4-221ENST00000489573 IGKV1D-12P01611 117 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 HLA-DQB1P01920 261 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 MGMTP16455 207 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 TRIQKQ629K1 86 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 SLC25A26Q70HW3 274 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 SAXO1Q8IYX7 474 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 ACBD4Q8NC06 268 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 PLPPR2Q96GM1 343 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 CA10Q9NS85 328 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 ATP23Q9Y6H3 246 aa18.47■□□□□ 0.55
SMC4-221ENST00000489573 HEATR1Q9H583 2144 aaKnown RBP18.46■□□□□ 0.55
SMC4-221ENST00000489573 FASNP49327 2511 aaKnown RBP18.46■□□□□ 0.55
SMC4-221ENST00000489573 TRAV18A0A075B6X5 111 aa18.46■□□□□ 0.55
SMC4-221ENST00000489573 ISPDA4D126 451 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms