RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 TSNAXQ99598 290 aaKnown RBP15.69■□□□□ 0.1
VIM-206ENST00000487938 ADAT1Q9BUB4 502 aaKnown RBP15.69■□□□□ 0.1
VIM-206ENST00000487938 SRXN1Q9BYN0 137 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 SLC6A15Q9H2J7 730 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 ZNF581Q9P0T4 197 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 PCDHGA1Q9Y5H4 931 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 SPRY1O43609 319 aaPredicted RBP15.69■□□□□ 0.1
VIM-206ENST00000487938 KLK3P07288 261 aaPredicted RBP15.69■□□□□ 0.1
VIM-206ENST00000487938 FAM157CP0CG43 387 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 CPT2P23786 658 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 PTGER4P35408 488 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 SSR4P51571 173 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 MTCP1P56278 107 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 NAAAQ02083 359 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 ZNF169Q14929 603 aaPredicted RBP15.69■□□□□ 0.1
VIM-206ENST00000487938 GUCA2BQ16661 112 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 PDSS1Q5T2R2 415 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 SLC16A14Q7RTX9 510 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 POC1AQ8NBT0 407 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 SLC39A7Q92504 469 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 EMG1Q92979 244 aaKnown RBP15.69■□□□□ 0.1
VIM-206ENST00000487938 ZNF2Q9BSG1 426 aaPredicted RBP15.69■□□□□ 0.1
VIM-206ENST00000487938 TM2D1Q9BX74 207 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 TMEM231Q9H6L2 316 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 WDR54Q9H977 334 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 TMEM100Q9NV29 134 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 HS3ST3B1Q9Y662 390 aa15.69■□□□□ 0.1
VIM-206ENST00000487938 TNRC18O15417 2968 aaPredicted RBP15.68■□□□□ 0.1
VIM-206ENST00000487938 ARID1AO14497 2285 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 FAM230AA0A1W2PPH8 454 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 SERPINE3A8MV23 424 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 MTRF1O75570 445 aaKnown RBP15.68■□□□□ 0.1
VIM-206ENST00000487938 KLF7O75840 302 aaPredicted RBP15.68■□□□□ 0.1
VIM-206ENST00000487938 ADCYAP1P18509 176 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 ACKR3P25106 362 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 OTX1P32242 354 aaPredicted RBP15.68■□□□□ 0.1
VIM-206ENST00000487938 RRADP55042 308 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 FOXL2NBQ6ZUU3 175 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 NAXEQ8NCW5 288 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 SEMA6DQ8NFY4 1073 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 FAAP24Q9BTP7 215 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 C14orf166Q9Y224 244 aaKnown RBP15.68■□□□□ 0.1
VIM-206ENST00000487938 PMS2P1A4D2B8 440 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 VAMP5O95183 116 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 ZNF205O95201 554 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 CSTBP04080 98 aaKnown RBP15.68■□□□□ 0.1
VIM-206ENST00000487938 CFIP05156 583 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 PATE4P0C8F1 98 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 LYL1P12980 280 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 MAML2Q8IZL2 1156 aaPredicted RBP15.68■□□□□ 0.1
VIM-206ENST00000487938 RHBDD1Q8TEB9 315 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 SPTSSAQ969W0 71 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 ZNF700Q9H0M5 742 aa15.68■□□□□ 0.1
VIM-206ENST00000487938 FOXD3Q9UJU5 478 aaPredicted RBP15.68■□□□□ 0.1
VIM-206ENST00000487938 FREM2Q5SZK8 3169 aa15.67■□□□□ 0.1
VIM-206ENST00000487938 ZNF705EA8MWA4 302 aaPredicted RBP15.67■□□□□ 0.1
VIM-206ENST00000487938 ICAM2P13598 275 aa15.67■□□□□ 0.1
VIM-206ENST00000487938 NTF4P34130 210 aa15.67■□□□□ 0.1
VIM-206ENST00000487938 ZNF84P51523 738 aa15.67■□□□□ 0.1
VIM-206ENST00000487938 ZNF133P52736 654 aaPredicted RBP15.67■□□□□ 0.1
VIM-206ENST00000487938 IL11RAQ14626 422 aa15.67■□□□□ 0.1
VIM-206ENST00000487938 TAF9Q16594 264 aa15.67■□□□□ 0.1
VIM-206ENST00000487938 TMEM88Q6PEY1 159 aa15.67■□□□□ 0.1
VIM-206ENST00000487938 RPS19BP1Q86WX3 136 aaKnown RBP15.67■□□□□ 0.1
VIM-206ENST00000487938 PUSL1Q8N0Z8 303 aaKnown RBP15.67■□□□□ 0.1
VIM-206ENST00000487938 AIFM2Q9BRQ8 373 aa15.67■□□□□ 0.1
VIM-206ENST00000487938 HPF1Q9NWY4 346 aa15.67■□□□□ 0.1
VIM-206ENST00000487938 NXT1Q9UKK6 140 aaKnown RBP15.67■□□□□ 0.1
VIM-206ENST00000487938 FIGNL2A6NMB9 653 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 MSTNO14793 375 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 IFNA2P01563 188 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 IL15RAQ13261 267 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 ZNF774Q6NX45 483 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 BRICD5Q6PL45 260 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 YRDCQ86U90 279 aaKnown RBP15.66■□□□□ 0.1
VIM-206ENST00000487938 C20orf196Q8IYI0 205 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 CLRN3Q8NCR9 226 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 NAT6Q93015 286 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 ARL11Q969Q4 196 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 AQP10Q96PS8 301 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 SLC5A7Q9GZV3 580 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 F12P00748 615 aaPredicted RBP15.66■□□□□ 0.1
VIM-206ENST00000487938 HGFACQ04756 655 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 RBM39Q14498 530 aaKnown RBP15.66■□□□□ 0.1
VIM-206ENST00000487938 EXT1Q16394 746 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 RPUSD3Q6P087 351 aaKnown RBP15.66■□□□□ 0.1
VIM-206ENST00000487938 OR4A4PQ8NGN8 299 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 CDX2Q99626 313 aaPredicted RBP15.66■□□□□ 0.1
VIM-206ENST00000487938 HRH4Q9H3N8 390 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 TREM1Q9NP99 234 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 PILRBQ9UKJ0 227 aa15.66■□□□□ 0.1
VIM-206ENST00000487938 F8W036 122 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 SGCEO43556 437 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 OPRM1P35372 400 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 RBMXP38159 391 aaKnown RBP15.65■□□□□ 0.1
VIM-206ENST00000487938 RAC1P63000 192 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 BLOC1S1P78537 153 aa15.65■□□□□ 0.1
VIM-206ENST00000487938 EIF3IQ13347 325 aaKnown RBP15.65■□□□□ 0.1
VIM-206ENST00000487938 IAH1Q2TAA2 248 aaPredicted RBP15.65■□□□□ 0.1
VIM-206ENST00000487938 MST1LQ2TV78 715 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms