RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 PANX1Q96RD7 426 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 MCHR1Q99705 422 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 ARMC7Q9H6L4 198 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 GRPEL1Q9HAV7 217 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 C14orf119Q9NWQ9 140 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 IL20Q9NYY1 176 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 RPS6KA6Q9UK32 745 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 SLC7A7Q9UM01 511 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 MYRFQ9Y2G1 1151 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 TEX13CA0A0J9YWL9 993 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 GGT3PA6NGU5 568 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 LY6LH3BQJ8 138 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 M0QZK8 103 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 DCTN6O00399 190 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 ATP6V1G1O75348 118 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 IGLV1-47P01700 117 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 HIST1H2ABP04908 130 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 ZNF728P0DKX0 622 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 PSKH1P11801 424 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 BMP2P12643 396 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 HOXB9P17482 250 aaPredicted RBP3.62□□□□□ -1.83
USP4-209ENST00000475873 S100A3P33764 101 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 KIR3DL2P43630 455 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 GPR12P47775 334 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 CAPZA1P52907 286 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 NME5P56597 212 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 LINC00205P59089 165 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 NAA20P61599 178 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 NCALDP61601 193 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 UFM1P61960 85 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 LSM6P62312 80 aaKnown RBP3.62□□□□□ -1.83
USP4-209ENST00000475873 ZNF45Q02386 682 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 MESTQ5EB52 335 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 ENTPD8Q5MY95 495 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 TTC33Q6PID6 262 aaPredicted RBP3.62□□□□□ -1.83
USP4-209ENST00000475873 IL34Q6ZMJ4 242 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 HIST3H2AQ7L7L0 130 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 THAP5Q7Z6K1 395 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 LYG2Q86SG7 212 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 NKAIN4Q8IVV8 208 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 DEFB125Q8N687 156 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 ZNF491Q8N8L2 437 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 ZNF454Q8N9F8 522 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 OR10Z1Q8NGY1 313 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 NFKBIDQ8NI38 313 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 LIPHQ8WWY8 451 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 STMN2Q93045 179 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 HIST1H2ACQ93077 130 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 RNF183Q96D59 192 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 PPP1R36Q96LQ0 422 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 NAPGQ99747 312 aaPredicted RBP3.62□□□□□ -1.83
USP4-209ENST00000475873 HDHD2Q9H0R4 259 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 AKTIPQ9H8T0 292 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 TPT1P8Q9HAU6 139 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 SRA1Q9HD15 236 aaKnown RBP3.62□□□□□ -1.83
USP4-209ENST00000475873 KRCC1Q9NPI7 259 aaPredicted RBP3.62□□□□□ -1.83
USP4-209ENST00000475873 ACTR3BQ9P1U1 418 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 STX18Q9P2W9 335 aaKnown RBP3.62□□□□□ -1.83
USP4-209ENST00000475873 APLNQ9ULZ1 77 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 COA3Q9Y2R0 106 aaPredicted RBP3.62□□□□□ -1.83
USP4-209ENST00000475873 PPP2R2CQ9Y2T4 447 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 NOP16Q9Y3C1 178 aaKnown RBP3.62□□□□□ -1.83
USP4-209ENST00000475873 FBXO7Q9Y3I1 522 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 ADAM18Q9Y3Q7 739 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 LRP1Q07954 4544 aaKnown RBP3.62□□□□□ -1.83
USP4-209ENST00000475873 LRP2P98164 4655 aa3.62□□□□□ -1.83
USP4-209ENST00000475873 IGHV4OR15-8A0A075B7B6 117 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 A0A087WW49 117 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP3.61□□□□□ -1.83
USP4-209ENST00000475873 FAM172BPA6NC97 362 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 RFPL4AA6NLU0 287 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 EPM2AB3EWF7 344 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 RFPL4AL1F8VTS6 287 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 M0R2N4 97 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 SLC22A2O15244 555 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 TYROBPO43914 113 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 TSC22D2O75157 780 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 PTP4A3O75365 173 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 KRT75O95678 551 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 RBP4P02753 201 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 MT-ND1P03886 318 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 OR8U9P0C7N5 309 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 NR2C1P13056 603 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 CPA3P15088 417 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 HTR1DP28221 377 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 AQP1P29972 269 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 OTX1P32242 354 aaPredicted RBP3.61□□□□□ -1.83
USP4-209ENST00000475873 BRS3P32247 399 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 GRK5P34947 590 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 GDNFP39905 211 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 NAA10P41227 235 aaPredicted RBP3.61□□□□□ -1.83
USP4-209ENST00000475873 GUCA1AP43080 201 aaPredicted RBP3.61□□□□□ -1.83
USP4-209ENST00000475873 RANBP1P43487 201 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 ETV1P50549 477 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 CLNS1AP54105 237 aaKnown RBP3.61□□□□□ -1.83
USP4-209ENST00000475873 CTXN1P60606 82 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 RELQ04864 619 aaPredicted RBP3.61□□□□□ -1.83
USP4-209ENST00000475873 MALLQ13021 153 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 DIAPH2-AS1Q14236 149 aa3.61□□□□□ -1.83
USP4-209ENST00000475873 RGNQ15493 299 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms