RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 GK3PQ14409 553 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 KRT74Q7RTS7 529 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 TRPM8Q7Z2W7 1104 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 KRT77Q7Z794 578 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 ADGRG5Q8IZF4 528 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 HS3ST5Q8IZT8 346 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 OR51G2Q8NGK0 314 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 C19orf12Q9NSK7 152 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 FAM206AQ9NX38 181 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 LAMP5Q9UJQ1 280 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 FOXJ3Q9UPW0 622 aa13.11□□□□□ -0.31
COL7A1-204ENST00000462475 SF3B6Q9Y3B4 125 aaKnown RBP13.11□□□□□ -0.31
COL7A1-204ENST00000462475 PRR32B1ATL7 298 aa13.1□□□□□ -0.31
COL7A1-204ENST00000462475 PSMD9O00233 223 aa13.1□□□□□ -0.31
COL7A1-204ENST00000462475 MAP2K3P46734 347 aa13.1□□□□□ -0.31
COL7A1-204ENST00000462475 EFNB2P52799 333 aa13.1□□□□□ -0.31
COL7A1-204ENST00000462475 CAPZA1P52907 286 aa13.1□□□□□ -0.31
COL7A1-204ENST00000462475 RPS7P62081 194 aaKnown RBP13.1□□□□□ -0.31
COL7A1-204ENST00000462475 HERPUD1Q15011 391 aa13.1□□□□□ -0.31
COL7A1-204ENST00000462475 CEACAM21Q3KPI0 293 aa13.1□□□□□ -0.31
COL7A1-204ENST00000462475 HAGHLQ6PII5 290 aaPredicted RBP13.1□□□□□ -0.31
COL7A1-204ENST00000462475 MKXQ8IYA7 352 aa13.1□□□□□ -0.31
COL7A1-204ENST00000462475 C11orf44Q8N8P7 122 aa13.1□□□□□ -0.31
COL7A1-204ENST00000462475 OR5D13Q8NGL4 314 aa13.1□□□□□ -0.31
COL7A1-204ENST00000462475 AQP3Q92482 292 aa13.1□□□□□ -0.31
COL7A1-204ENST00000462475 SDSLQ96GA7 329 aa13.1□□□□□ -0.31
COL7A1-204ENST00000462475 CLPTM1LQ96KA5 538 aa13.1□□□□□ -0.31
COL7A1-204ENST00000462475 ZNF488Q96MN9 340 aa13.1□□□□□ -0.31
COL7A1-204ENST00000462475 DNAH3Q8TD57 4116 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 A0A0U1RQV5 110 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 MEGF11A6BM72 1044 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 OR5B21A6NL26 309 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 G3V4G9 280 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 HMGN1P05114 100 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 MRPL3P09001 348 aaKnown RBP13.09□□□□□ -0.31
COL7A1-204ENST00000462475 OSMP13725 252 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 FAHP16930 419 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 CDK5Q00535 292 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 LRRC75BQ2VPJ9 315 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 SLC35D3Q5M8T2 416 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 TMEM236Q5W0B7 351 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 PLCXD3Q63HM9 321 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 CRIP3Q6Q6R5 217 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 Q6ZTK2 550 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 MOB3CQ70IA8 216 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 THAP5Q7Z6K1 395 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 COMMD2Q86X83 199 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 OR4C13Q8NGP0 309 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 ZNF671Q8TAW3 534 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 OR51E1Q8TCB6 317 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 ASB9Q96DX5 294 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 NSL1Q96IY1 281 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 LRGUKQ96M69 825 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 TTTY10Q9BZA0 68 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 PBOV1Q9GZY1 135 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 GPR84Q9NQS5 396 aa13.09□□□□□ -0.31
COL7A1-204ENST00000462475 TET2Q6N021 2002 aaPredicted RBP13.08□□□□□ -0.31
COL7A1-204ENST00000462475 TMEM269A0A1B0GVZ9 245 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 RFPL4AA6NLU0 287 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 RFPL4AL1F8VTS6 287 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 CHST1O43916 411 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 MTRF1O75570 445 aaKnown RBP13.08□□□□□ -0.32
COL7A1-204ENST00000462475 IGLV3-1P01715 115 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 KIR2DS4P43632 304 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 CEBPDP49716 269 aaPredicted RBP13.08□□□□□ -0.32
COL7A1-204ENST00000462475 BMXP51813 675 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 APOFQ13790 326 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 ACP7Q6ZNF0 438 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 C11orf42Q8N5U0 333 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 CD177Q8N6Q3 437 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 KLHDC1Q8N7A1 406 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 OR5A2Q8NGI9 324 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 PPP1R14AQ96A00 147 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 YIPF3Q9GZM5 350 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 FAM234AQ9H0X4 552 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 MEGF9Q9H1U4 602 aa13.08□□□□□ -0.32
COL7A1-204ENST00000462475 CCDC182A6NF36 153 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 GNGT2O14610 69 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 SYNGR1O43759 233 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 T-ENOLP0DO92 83 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 PRKACGP22612 351 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 COX7A1P24310 79 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 ERVFRD-1P60508 538 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 RPL31P62899 125 aaKnown RBP13.07□□□□□ -0.32
COL7A1-204ENST00000462475 MFGE8Q08431 387 aaPredicted RBP13.07□□□□□ -0.32
COL7A1-204ENST00000462475 RIPPLY1Q0D2K3 151 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 AANATQ16613 207 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 SMIM21Q3B7S5 101 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 BEAN1Q3B7T3 259 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 DEGS2Q6QHC5 323 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 POC1AQ8NBT0 407 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 OR5K1Q8NHB7 308 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 CANT1Q8WVQ1 401 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 CFHR4Q92496 578 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 TEAD3Q99594 435 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 MROQ9BYG7 248 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 RANBP3Q9H6Z4 567 aaPredicted RBP13.07□□□□□ -0.32
COL7A1-204ENST00000462475 SLC25A19Q9HC21 320 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 COPS3Q9UNS2 423 aa13.07□□□□□ -0.32
COL7A1-204ENST00000462475 PIGLQ9Y2B2 252 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms