RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 FAAP24Q9BTP7 215 aa10.28□□□□□ -0.76
NPHP4-204ENST00000460696 NECAP2Q9NVZ3 263 aa10.28□□□□□ -0.76
NPHP4-204ENST00000460696 OR14J1Q9UGF5 321 aa10.28□□□□□ -0.76
NPHP4-204ENST00000460696 GLS2Q9UI32 602 aa10.28□□□□□ -0.76
NPHP4-204ENST00000460696 FLNBO75369 2602 aaKnown RBP10.28□□□□□ -0.76
NPHP4-204ENST00000460696 LOC101059948A0A1B0GTJ6 334 aa10.27□□□□□ -0.76
NPHP4-204ENST00000460696 DHRS3O75911 302 aa10.27□□□□□ -0.76
NPHP4-204ENST00000460696 GABRA1P14867 456 aa10.27□□□□□ -0.76
NPHP4-204ENST00000460696 FCGR2CP31995 323 aa10.27□□□□□ -0.76
NPHP4-204ENST00000460696 EIF2S3P41091 472 aaKnown RBP10.27□□□□□ -0.76
NPHP4-204ENST00000460696 RPL35P42766 123 aaKnown RBP10.27□□□□□ -0.76
NPHP4-204ENST00000460696 KRBOX4Q5JUW0 171 aa10.27□□□□□ -0.76
NPHP4-204ENST00000460696 BAP18Q8IXM2 172 aa10.27□□□□□ -0.76
NPHP4-204ENST00000460696 FAM131CQ96AQ9 280 aa10.27□□□□□ -0.76
NPHP4-204ENST00000460696 TIMP4Q99727 224 aa10.27□□□□□ -0.76
NPHP4-204ENST00000460696 SPIN2AQ99865 258 aa10.27□□□□□ -0.76
NPHP4-204ENST00000460696 SPIN2BQ9BPZ2 258 aa10.27□□□□□ -0.76
NPHP4-204ENST00000460696 KIF25Q9UIL4 384 aa10.27□□□□□ -0.76
NPHP4-204ENST00000460696 KLK13Q9UKR3 277 aa10.27□□□□□ -0.76
NPHP4-204ENST00000460696 TLN1Q9Y490 2541 aaKnown RBP10.27□□□□□ -0.77
NPHP4-204ENST00000460696 SSX5O60225 188 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 RAC1P63000 192 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 CFHR1Q03591 330 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 ACER2Q5QJU3 275 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 TMEM200AQ86VY9 491 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 OR5AS1Q8N127 324 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 OR5M8Q8NGP6 311 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 OR2Y1Q8NGV0 311 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 OR1S1Q8NH92 325 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 OR1F12Q8NHA8 337 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 OR2V1Q8NHB1 315 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 SCGB1C1Q8TD33 95 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 NANOS1Q8WY41 292 aaKnown RBP10.27□□□□□ -0.77
NPHP4-204ENST00000460696 APH1AQ96BI3 265 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 CLCC1Q96S66 551 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 DNTTIP1Q9H147 329 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 DEFB127Q9H1M4 99 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 KCNAB3O43448 404 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 CD46P15529 392 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 RPA2P15927 270 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 THBS4P35443 961 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 HNF4GQ14541 408 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 SIGIRRQ6IA17 410 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 NAA40Q86UY6 237 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 SVBPQ8N300 66 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 KCNRGQ8N5I3 272 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 ZDHHC22Q8N966 263 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 CCDC54Q8NEL0 328 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 DNASE2BQ8WZ79 361 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 RDH5Q92781 318 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 ZFP57Q9NU63 452 aa10.27□□□□□ -0.77
NPHP4-204ENST00000460696 C19orf67A6NJJ6 358 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 HS3ST1O14792 307 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 XRCC2O43543 280 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 RAMP1O60894 148 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 PIGPP57054 158 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 DHRS9Q9BPW9 319 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 CYB5R1Q9UHQ9 305 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 KCNK7Q9Y2U2 307 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 HMSDA8MTL9 139 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 BCL2L11O43521 198 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 MPC2O95563 127 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 IFNA5P01569 189 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 RRASP10301 218 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 CCL2P13500 99 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 ZP1P60852 638 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 PAN3Q58A45 887 aaKnown RBP10.26□□□□□ -0.77
NPHP4-204ENST00000460696 ADAD2Q8NCV1 583 aaKnown RBP10.26□□□□□ -0.77
NPHP4-204ENST00000460696 OR10D3Q8NH80 312 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 TAF9BQ9HBM6 251 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 RPS10P5Q9NQ39 176 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 FLVCR1Q9Y5Y0 555 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 AQP7P3A6NL99 342 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 H2BFSP57053 126 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 TGFBR3Q03167 851 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 C19orf57Q0VDD7 668 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 ZP4Q12836 540 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 TMEM217Q8N7C4 229 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 RTN4IP1Q8WWV3 396 aaPredicted RBP10.26□□□□□ -0.77
NPHP4-204ENST00000460696 SPSB2Q99619 263 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 GFI1Q99684 422 aa10.26□□□□□ -0.77
NPHP4-204ENST00000460696 SERPINE3A8MV23 424 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 ZNHIT1O43257 154 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 RRADP55042 308 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 FNDC7Q5VTL7 733 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 SPINK14Q6IE38 97 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 H3F3CQ6NXT2 135 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 OR13C8Q8NGS7 320 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 OR6K3Q8NGY3 331 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 SLC25A32Q9H2D1 315 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 GHRLQ9UBU3 117 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 SNRNP70P08621 437 aaKnown RBP10.25□□□□□ -0.77
NPHP4-204ENST00000460696 HAAOP46952 286 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 MPPED2Q15777 294 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 PNLIPRP3Q17RR3 467 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 MICBQ29980 383 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 TMEM88Q6PEY1 159 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 STX12Q86Y82 276 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 INTS12Q96CB8 462 aaKnown RBP10.25□□□□□ -0.77
NPHP4-204ENST00000460696 ZNF285Q96NJ3 590 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms