RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 UNC13CQ8NB66 2214 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 MSGN1A6NI15 193 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 RAMP1O60894 148 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 IFNA2P01563 188 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 HPNP05981 417 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 GLAP06280 429 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 ADCYAP1P18509 176 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 PI3P19957 117 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 EIF2S3P41091 472 aaKnown RBP9.91□□□□□ -0.82
USP4-205ENST00000431357 H3F3AP84243 136 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 SPEM1Q8N4L4 309 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 SFT2D1Q8WV19 159 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 ROBO4Q8WZ75 1007 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 SMIM8Q96KF7 97 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 PAPOLGQ9BWT3 736 aaKnown RBP9.91□□□□□ -0.82
USP4-205ENST00000431357 TREM1Q9NP99 234 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 UQCC1Q9NVA1 299 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 SPAG17Q6Q759 2223 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 UNC80Q8N2C7 3258 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 SDCBPO00560 298 aaPredicted RBP9.91□□□□□ -0.82
USP4-205ENST00000431357 IGHV2-70P01814 119 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 CTSDP07339 412 aaPredicted RBP9.91□□□□□ -0.82
USP4-205ENST00000431357 FCGR2AP12318 317 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 SERPINA2P20848 420 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 ENDOGQ14249 297 aaKnown RBP9.91□□□□□ -0.82
USP4-205ENST00000431357 SHBQ15464 509 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 UBE2V2Q15819 145 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 GUCA2BQ16661 112 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 MST1LQ2TV78 715 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 H3F3CQ6NXT2 135 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 CRIP3Q6Q6R5 217 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 C1QL2Q7Z5L3 287 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 SGPP2Q8IWX5 399 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 OR4A4PQ8NGN8 299 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 SVIPQ8NHG7 77 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 NANPQ8TBE9 248 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 SPTSSAQ969W0 71 aa9.91□□□□□ -0.82
USP4-205ENST00000431357 CPNE2Q96FN4 548 aaPredicted RBP9.91□□□□□ -0.82
USP4-205ENST00000431357 CHCHD2Q9Y6H1 151 aaPredicted RBP9.91□□□□□ -0.82
USP4-205ENST00000431357 DHRS7CA6NNS2 312 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 E9PLN8 166 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 F5H5K5 113 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 DHHO43323 396 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 IFNA21P01568 189 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 HOXB5P09067 269 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 ANOS1P23352 680 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 OTX1P32242 354 aaPredicted RBP9.9□□□□□ -0.82
USP4-205ENST00000431357 CAV2P51636 162 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 AKR1C2P52895 323 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 AKR1C1Q04828 323 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 SMCO1Q147U7 214 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 PPP1R3BQ86XI6 285 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 OR5D18Q8NGL1 313 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 LIN37Q96GY3 246 aaPredicted RBP9.9□□□□□ -0.82
USP4-205ENST00000431357 SHDQ96IW2 340 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 MICU1Q9BPX6 476 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 CNTNAP3Q9BZ76 1288 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 GSKIPQ9P0R6 139 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 NXT1Q9UKK6 140 aaKnown RBP9.9□□□□□ -0.82
USP4-205ENST00000431357 PIGLQ9Y2B2 252 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 POMT1Q9Y6A1 747 aa9.9□□□□□ -0.82
USP4-205ENST00000431357 ARID1BQ8NFD5 2236 aaPredicted RBP9.9□□□□□ -0.83
USP4-205ENST00000431357 IGHV5-10-1A0A0J9YXX1 117 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 NPIPA2E9PIF3 369 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 NPIPA3F8WFD2 350 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 CST4P01036 141 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 GAPDHP04406 335 aaKnown RBP9.89□□□□□ -0.83
USP4-205ENST00000431357 HKR1P10072 659 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 PVALBP20472 110 aaPredicted RBP9.89□□□□□ -0.83
USP4-205ENST00000431357 SULT1A2P50226 295 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 SUCLG1P53597 346 aaKnown RBP9.89□□□□□ -0.83
USP4-205ENST00000431357 STARD6P59095 220 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 S100A10P60903 97 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 HFEQ30201 348 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 RNF212Q495C1 297 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 MRPL14Q6P1L8 145 aaKnown RBP9.89□□□□□ -0.83
USP4-205ENST00000431357 OPN5Q6U736 354 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 SULF2Q8IWU5 870 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 FNDC9Q8TBE3 224 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 NABP1Q96AH0 204 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 RHOFQ9HBH0 211 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 TAF9BQ9HBM6 251 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 OR2S2Q9NQN1 319 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 DECR2Q9NUI1 292 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 PRR13Q9NZ81 148 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 RALGAPA1Q6GYQ0 2036 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 LOC102723996A0A087X1L8 192 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 OR5H15A6NDH6 313 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 M0R135 149 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 JTBO76095 146 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 SERPINA5P05154 406 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 SFTPBP07988 381 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 FAHP16930 419 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 PTGER4P35408 488 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 RFC3P40938 356 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 SPCS3P61009 180 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 CCL7P80098 99 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 RBM39Q14498 530 aaKnown RBP9.89□□□□□ -0.83
USP4-205ENST00000431357 IAH1Q2TAA2 248 aaPredicted RBP9.89□□□□□ -0.83
USP4-205ENST00000431357 SEMA6DQ8NFY4 1073 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms