RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 GJB3O75712 270 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 XKR7Q5GH72 579 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 FFAR4Q5NUL3 377 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 SMIM19Q96E16 107 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 DUS3LQ96G46 650 aaKnown RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 MOB4Q9Y3A3 225 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 DOCK3Q8IZD9 2030 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 M0R296 226 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 HSBP1O75506 76 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 PTGFRP43088 359 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 TAGLNQ01995 201 aaKnown RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 KIAA0141Q14154 515 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 ASTLQ6HA08 431 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 FAHD1Q6P587 224 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 PCNPQ8WW12 178 aaKnown RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 C19orf43Q9BQ61 176 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 SLC25A32Q9H2D1 315 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 MARCH5Q9NX47 278 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 TAPBPO15533 448 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 MPGP29372 298 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 CCR6P51684 374 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 C1orf220Q5T0J3 134 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 PDPNQ86YL7 162 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 HEXA-AS1Q9H8Q6 139 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 MBNL1Q9NR56 388 aaKnown RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 LYRM2Q9NU23 88 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 KMT2EQ8IZD2 1858 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 IGLV3-10A0A075B6K4 115 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 TMEM202A6NGA9 273 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 ALG1L2C9J202 215 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 TMPRSS2O15393 492 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 NEURL1O76050 574 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 OR3A4PP47883 348 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 HNRNPA3P51991 378 aaKnown RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF252P-AS1Q0IIN9 211 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 CEACAM16Q2WEN9 425 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 CCDC190Q86UF4 302 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 TGIF2LYQ8IUE0 185 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 OR1B1Q8NGR6 318 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 MRPL37Q9BZE1 423 aaKnown RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 SAP30LQ9HAJ7 183 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 HELTA6NFD8 242 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 PHOX2AO14813 284 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 ALDOCP09972 364 aaKnown RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 NME1P15531 152 aaKnown RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 ST6GAL1P15907 406 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 MGMTP16455 207 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 FUT3P21217 361 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 HTR1DP28221 377 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 TMPRSS3P57727 454 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 TCTN3Q6NUS6 607 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 SPICQ8N5J4 248 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 ARRDC2Q8TBH0 407 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 TMED6Q8WW62 240 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF426Q9BUY5 554 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 VAMP8Q9BV40 100 aa6.17□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF230Q9UIE0 474 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-204ENST00000423058 K7ESM1 405 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 SS18L1O75177 396 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-204ENST00000423058 HTN1P15515 57 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 DIO1P49895 249 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 KRTDAPP60985 99 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 TOR2AQ5JU69 321 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 FNDC7Q5VTL7 733 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 OR4C5Q8NGB2 326 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 RHOXF1Q8NHV9 184 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 NT5CQ8TCD5 201 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 KTI12Q96EK9 354 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-204ENST00000423058 MRAP2Q96G30 205 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 UQCC2Q9BRT2 126 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 NKX6-2Q9C056 277 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-204ENST00000423058 ADGRL4Q9HBW9 690 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 FGF22Q9HCT0 170 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF71Q9NQZ8 489 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-204ENST00000423058 SIRT3Q9NTG7 399 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-204ENST00000423058 POMT2Q9UKY4 750 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 METTL12A8MUP2 240 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 C21orf140B9A014 251 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 H0Y8X5 98 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 ACTL6AO96019 429 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 HIST1H1BP16401 226 aaKnown RBP6.16□□□□□ -1.42
SCN1A-204ENST00000423058 BAK1Q16611 211 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 C1orf174Q8IYL3 243 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 TMEM123Q8N131 208 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 C2orf50Q96LR7 162 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 FOXB1Q99853 325 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 FBXO8Q9NRD0 319 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 TO15178 435 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 GNG7O60262 68 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 NGFP01138 241 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 OR5AL1P0C617 328 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 SYT8Q8NBV8 401 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 SLC26A10Q8NG04 563 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 OR4S2Q8NH73 311 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF596Q8TC21 504 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 WDR13Q9H1Z4 485 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 A0A1W2PR48 441 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 POM121BA6NF01 834 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 COX7A1P24310 79 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 BTG2P78543 158 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms