RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 RHBDL2Q9NX52 303 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 TAAR3PQ9P1P4 343 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 UBR5O95071 2799 aaPredicted RBP14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 TMEM272A0A1B0GTI8 110 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 PQLC2LA1A4F0 135 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 FABP12A6NFH5 140 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 CRTAPO75718 401 aaPredicted RBP14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 KDM4BO94953 1096 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 CSTBP04080 98 aaKnown RBP14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 EIF4EP06730 217 aaKnown RBP14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 HAAOP46952 286 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 IL18Q14116 193 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 GPR176Q14439 515 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 FAM189A2Q15884 450 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 BAIAP2L2Q6UXY1 529 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 OR2W3Q7Z3T1 314 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 CCDC190Q86UF4 302 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 LYPD6Q86Y78 171 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 KCNG3Q8TAE7 436 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 FAM222BQ8WU58 562 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 MRPL37Q9BZE1 423 aaKnown RBP14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 CXXC4Q9H2H0 198 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 PLCE1Q9P212 2302 aa14.63□□□□□ -0.07
CCDC28B-202ENST00000421922 IGLV3-9A0A075B6K5 115 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 METTL21EPA6NDL7 271 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 TMEM210A6NLX4 147 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 SPRY1O43609 319 aaPredicted RBP14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 OR4A8P0C604 315 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 MMP15P51511 669 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 SLC22A6Q4U2R8 563 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 LRP11Q86VZ4 500 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 ZNF611Q8N823 705 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 OR10AD1Q8NGE0 317 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 ATG5Q9H1Y0 275 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 KCNK15Q9H427 330 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 CXorf56Q9H5V9 222 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 MSL2Q9HCI7 577 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 DIABLOQ9NR28 239 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 MYEF2Q9P2K5 600 aaKnown RBP14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 RAB22AQ9UL26 194 aa14.62□□□□□ -0.07
CCDC28B-202ENST00000421922 IGKV1-27A0A075B6S5 117 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 SHISA9B4DS77 424 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 ZNF780AO75290 641 aaPredicted RBP14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 RAB6AP20340 208 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 SERPINA2P20848 420 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 TNFSF4P23510 183 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 ETV6P41212 452 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 EVX1P49640 407 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 PDZK1IP1Q13113 114 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 METAP1DQ6UB28 335 aaPredicted RBP14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 RNF144BQ7Z419 303 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 MKXQ8IYA7 352 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 CMTM4Q8IZR5 234 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 MFSD4AQ8N468 514 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 ZSCAN4Q8NAM6 433 aaPredicted RBP14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 OR2Z1Q8NG97 314 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 FAM46BQ96A09 425 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 PTX4Q96A99 478 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 SLC25A38Q96DW6 304 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 URM1Q9BTM9 101 aaKnown RBP14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 TMEM59Q9BXS4 323 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 ABCG5Q9H222 651 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 RABL2AQ9UBK7 228 aaPredicted RBP14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 RABL2BQ9UNT1 228 aa14.61□□□□□ -0.07
CCDC28B-202ENST00000421922 LRP5LA4QPB2 252 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 ANGPTL7O43827 346 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 SCGNO76038 276 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 HTR3BO95264 441 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 MPIG6BO95866 241 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 VSIG8P0DPA2 414 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 ALDH3B1P43353 468 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 ZP1P60852 638 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 MADCAM1Q13477 382 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 ADIPOQQ15848 244 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 MSMPQ1L6U9 139 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 PYDC2Q56P42 97 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 TMEM69Q5SWH9 247 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 OR10K2Q6IF99 312 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 HAGHLQ6PII5 290 aaPredicted RBP14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 SLC25A26Q70HW3 274 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 DMRTC2Q8IXT2 367 aaPredicted RBP14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 PXT1Q8NFP0 134 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 OR4M1Q8NGD0 313 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 OR51F2Q8NH61 342 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 BORCS5Q969J3 196 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 GAL3ST1Q99999 423 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 POLDIP2Q9Y2S7 368 aa14.6□□□□□ -0.07
CCDC28B-202ENST00000421922 A6NLC8 198 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 TRAPPC2LH3BP13 241 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 J3QT63 122 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 GRPP07492 148 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 INHBBP09529 407 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 NAT2P11245 290 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 PTBP1P26599 531 aaKnown RBP eCLIP14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 SERPINF1P36955 418 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 NR4A2P43354 598 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 ZNF81P51508 661 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 PITPNAQ00169 270 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 TMEM255AQ5JRV8 349 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 C16orf87Q6PH81 154 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms