RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 KIR2DS1Q14954 304 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 MPV17LQ2QL34 196 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 ABCA11PQ4W5N1 156 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 ATAD3CQ5T2N8 411 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 SFRP5Q5T4F7 317 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 TMEM200AQ86VY9 491 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 ZDHHC22Q8N966 263 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 CCDC71LQ8N9Z2 235 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 OR1J1Q8NGS3 322 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 SLC25A28Q96A46 364 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 OR10A4Q9H209 315 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 HSF4Q9ULV5 492 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 ALG5Q9Y673 324 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 LOC105371267A0A1B0GV96 52 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 ARPC1BO15143 372 aaKnown RBP7.29□□□□□ -1.24
USP54-203ENST00000418501 IGLV3-1P01715 115 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 CYCSP99999 105 aaKnown RBP7.29□□□□□ -1.24
USP54-203ENST00000418501 TNK1Q13470 666 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 RGS7BPQ6MZT1 257 aaPredicted RBP7.29□□□□□ -1.24
USP54-203ENST00000418501 OR5AS1Q8N127 324 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 COQ8AQ8NI60 647 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 POM121L2Q96KW2 1035 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 REPIN1Q9BWE0 567 aaKnown RBP7.29□□□□□ -1.24
USP54-203ENST00000418501 PPA2Q9H2U2 334 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 FBXO9Q9UK97 447 aaPredicted RBP7.29□□□□□ -1.24
USP54-203ENST00000418501 PATE4P0C8F1 98 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 FUT3P21217 361 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 DTYMKP23919 212 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 MDH2P40926 338 aaKnown RBP7.29□□□□□ -1.24
USP54-203ENST00000418501 OR3A4PP47883 348 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 HIKESHIQ53FT3 197 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 TIMM23BQ5SRD1 257 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 CELF2-AS1Q8N7Q2 184 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 OR2AE1Q8NHA4 323 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 SLC7A6Q92536 515 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 ABHD17AQ96GS6 310 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 TM2D1Q9BX74 207 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 ZFP57Q9NU63 452 aa7.29□□□□□ -1.24
USP54-203ENST00000418501 TMEM82A0PJX8 343 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 EEF1E1-BLOC1S5C9J1V9 151 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 ZNF92Q03936 586 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 PDZK1IP1Q13113 114 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 KRTAP27-1Q3LI81 207 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 FAHD2BQ6P2I3 314 aaPredicted RBP7.28□□□□□ -1.24
USP54-203ENST00000418501 IDO2Q6ZQW0 420 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 OR13G1Q8NGZ3 307 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 OR6F1Q8NGZ6 308 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 AQP3Q92482 292 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 FAHD2AQ96GK7 314 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 GFI1Q99684 422 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 PDCD10Q9BUL8 212 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 NECAP2Q9NVZ3 263 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 KCNIP1Q9NZI2 227 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 LRP5LA4QPB2 252 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 ZNF732B4DXR9 585 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 LYZL6O75951 148 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 SLC34A2O95436 690 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 IL13RA2Q14627 380 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 SURF2Q15527 256 aaPredicted RBP7.28□□□□□ -1.24
USP54-203ENST00000418501 SNAI3Q3KNW1 292 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 PLA1AQ53H76 456 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 FBXW12Q6X9E4 464 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 COLCA1Q6ZS62 124 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 MOB1BQ7L9L4 216 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 RND1Q92730 232 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 RNF166Q96A37 237 aaPredicted RBP7.28□□□□□ -1.24
USP54-203ENST00000418501 PHB2Q99623 299 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 TRAF4Q9BUZ4 470 aaPredicted RBP7.28□□□□□ -1.24
USP54-203ENST00000418501 ALX4Q9H161 411 aaPredicted RBP7.28□□□□□ -1.24
USP54-203ENST00000418501 CXXC4Q9H2H0 198 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.28□□□□□ -1.24
USP54-203ENST00000418501 MYEF2Q9P2K5 600 aaKnown RBP7.28□□□□□ -1.24
USP54-203ENST00000418501 TMEM235A6NFC5 223 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 OR5H1A6NKK0 313 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 J3QT63 122 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 LDLRAD4O15165 306 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 PDCD6O75340 191 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 PLATP00750 562 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 IRF2P14316 349 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 SRP9P49458 86 aaKnown RBP7.28□□□□□ -1.24
USP54-203ENST00000418501 RAP2BP61225 183 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 RNFT1Q5M7Z0 435 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 ZNF565Q8N9K5 539 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 OR5D18Q8NGL1 313 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 OR11L1Q8NGX0 322 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 GIMAP1Q8WWP7 306 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 SEH1LQ96EE3 360 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 ZNF837Q96EG3 531 aaPredicted RBP7.28□□□□□ -1.24
USP54-203ENST00000418501 BANF2Q9H503 90 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 MPDZO75970 2070 aa7.28□□□□□ -1.24
USP54-203ENST00000418501 IFNA21P01568 189 aa7.27□□□□□ -1.24
USP54-203ENST00000418501 ZNF260Q3ZCT1 412 aa7.27□□□□□ -1.24
USP54-203ENST00000418501 TMEM42Q69YG0 159 aa7.27□□□□□ -1.24
USP54-203ENST00000418501 TMEM108Q6UXF1 575 aa7.27□□□□□ -1.24
USP54-203ENST00000418501 MRGPRGQ86SM5 289 aa7.27□□□□□ -1.24
USP54-203ENST00000418501 UXS1Q8NBZ7 420 aa7.27□□□□□ -1.24
USP54-203ENST00000418501 BEST4Q8NFU0 473 aa7.27□□□□□ -1.24
USP54-203ENST00000418501 BOD1Q96IK1 185 aa7.27□□□□□ -1.24
USP54-203ENST00000418501 ZNF629Q9UEG4 869 aaPredicted RBP7.27□□□□□ -1.24
USP54-203ENST00000418501 TP53TG5Q9Y2B4 290 aa7.27□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms