RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 MMP28Q9H239 520 aa7.54□□□□□ -1.2
SYNE1-211ENST00000413186 ESRP2Q9H6T0 727 aaKnown RBP7.54□□□□□ -1.2
SYNE1-211ENST00000413186 TAS2R5Q9NYW4 299 aa7.54□□□□□ -1.2
SYNE1-211ENST00000413186 LIPGQ9Y5X9 500 aa7.54□□□□□ -1.2
SYNE1-211ENST00000413186 KIAA1549LQ6ZVL6 1849 aa7.54□□□□□ -1.2
SYNE1-211ENST00000413186 GABARAPH6UMI1 98 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 PLPP2O43688 288 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 SERPINA2P20848 420 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 APEX1P27695 318 aaKnown RBP7.53□□□□□ -1.2
SYNE1-211ENST00000413186 CAMLGP49069 296 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 RAP2BP61225 183 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 ZNF468Q5VIY5 522 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-211ENST00000413186 SFRP4Q6FHJ7 346 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-211ENST00000413186 OR1J1Q8NGS3 322 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 OR5H2Q8NGV7 314 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 JAM3Q9BX67 310 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 PIGMQ9H3S5 423 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 LOC100289279A0A1B0GTE1 492 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 CDRT15L2A8MXV6 281 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 AGPAT2O15120 278 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 PAHP00439 452 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 NRASP01111 189 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 HLA-HP01893 362 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 CHRM2P08172 466 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 FABP5Q01469 135 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 SSBP1Q04837 148 aaKnown RBP7.53□□□□□ -1.2
SYNE1-211ENST00000413186 OR51A2Q8NGJ7 313 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 PRR7Q8TB68 274 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 LGALS14Q8TCE9 139 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 MRAPQ8TCY5 172 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 PSMF1Q92530 271 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 ZNF286AQ9HBT8 521 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 TMEM38BQ9NVV0 291 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 OSGIN2Q9Y236 505 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 RER1O15258 196 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 TCF21O43680 179 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 NXPH2O95156 264 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 THBS4P35443 961 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 ECI1P42126 302 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 PCK2Q16822 640 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 UNQ6494/PRO21346Q6UXR6 183 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 PTP4A1Q93096 173 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 ZNF385AQ96PM9 386 aaKnown RBP7.53□□□□□ -1.2
SYNE1-211ENST00000413186 C16orf97H3BN30 126 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 HSBP1O75506 76 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 NTN1O95631 604 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 SFTPBP07988 381 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 SNRNP70P08621 437 aaKnown RBP7.53□□□□□ -1.2
SYNE1-211ENST00000413186 CLEC2LP0C7M8 214 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 FAM157BP0CG42 384 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 LIMS3P0CW19 117 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 LIMS4P0CW20 117 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 CTSSP25774 331 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 GDNFP39905 211 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 RRAS2P62070 204 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-211ENST00000413186 HIST1H3AP68431 136 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 LSM11P83369 360 aaKnown RBP eCLIP7.53□□□□□ -1.2
SYNE1-211ENST00000413186 CDONQ4KMG0 1287 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 LHFPL2Q6ZUX7 228 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 ZNF611Q8N823 705 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 FAM213BQ8TBF2 198 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 TIMD4Q96H15 378 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 TIMP4Q99727 224 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 SLC25A21Q9BQT8 299 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-211ENST00000413186 ARL6Q9H0F7 186 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 NOX3Q9HBY0 568 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 SLC22A13Q9Y226 551 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 OTOGLQ3ZCN5 2332 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 DENND4AQ7Z401 1863 aa7.53□□□□□ -1.2
SYNE1-211ENST00000413186 IGKV1D-42A0A075B6H8 117 aa7.52□□□□□ -1.2
SYNE1-211ENST00000413186 FBLL1A6NHQ2 334 aaKnown RBP7.52□□□□□ -1.2
SYNE1-211ENST00000413186 MCRIP1C9JLW8 97 aa7.52□□□□□ -1.2
SYNE1-211ENST00000413186 OR7C1O76099 320 aaPredicted RBP7.52□□□□□ -1.2
SYNE1-211ENST00000413186 TOXO94900 526 aa7.52□□□□□ -1.2
SYNE1-211ENST00000413186 EPPINO95925 133 aa7.52□□□□□ -1.2
SYNE1-211ENST00000413186 SNRPBP14678 240 aaKnown RBP7.52□□□□□ -1.2
SYNE1-211ENST00000413186 PTH2RP49190 550 aa7.52□□□□□ -1.2
SYNE1-211ENST00000413186 ZNF774Q6NX45 483 aa7.52□□□□□ -1.2
SYNE1-211ENST00000413186 C19orf48Q6RUI8 117 aa7.52□□□□□ -1.2
SYNE1-211ENST00000413186 TSEN54Q7Z6J9 526 aaKnown RBP7.52□□□□□ -1.2
SYNE1-211ENST00000413186 ZDHHC23Q8IYP9 409 aa7.52□□□□□ -1.2
SYNE1-211ENST00000413186 BHLHE23Q8NDY6 225 aa7.52□□□□□ -1.2
SYNE1-211ENST00000413186 PIGTQ969N2 578 aa7.52□□□□□ -1.2
SYNE1-211ENST00000413186 C4orf45Q96LM5 186 aa7.52□□□□□ -1.2
SYNE1-211ENST00000413186 WFDC6Q9BQY6 131 aa7.52□□□□□ -1.2
SYNE1-211ENST00000413186 MRPL13Q9BYD1 178 aaKnown RBP7.52□□□□□ -1.2
SYNE1-211ENST00000413186 C11orf54Q9H0W9 315 aaPredicted RBP7.52□□□□□ -1.2
SYNE1-211ENST00000413186 SLC35D1Q9NTN3 355 aa7.52□□□□□ -1.2
SYNE1-211ENST00000413186 SDHAF2Q9NX18 166 aa7.52□□□□□ -1.2
SYNE1-211ENST00000413186 ICE1Q9Y2F5 2266 aa7.52□□□□□ -1.21
SYNE1-211ENST00000413186 FAM87AP0C7U9 286 aa7.52□□□□□ -1.21
SYNE1-211ENST00000413186 GIFP27352 417 aa7.52□□□□□ -1.21
SYNE1-211ENST00000413186 CD34P28906 385 aa7.52□□□□□ -1.21
SYNE1-211ENST00000413186 CRYBB2P43320 205 aa7.52□□□□□ -1.21
SYNE1-211ENST00000413186 ZNF83P51522 516 aa7.52□□□□□ -1.21
SYNE1-211ENST00000413186 PEA15Q15121 130 aa7.52□□□□□ -1.21
SYNE1-211ENST00000413186 POU4F3Q15319 338 aa7.52□□□□□ -1.21
SYNE1-211ENST00000413186 GLYATL3Q5SZD4 288 aa7.52□□□□□ -1.21
SYNE1-211ENST00000413186 TSPO2Q5TGU0 170 aa7.52□□□□□ -1.21
SYNE1-211ENST00000413186 GSG1LQ6UXU4 331 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms