RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 OR2A4O95047 310 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 PTHLHP12272 177 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 PRF1P14222 555 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 ZP1P60852 638 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 DHODHQ02127 395 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 OR8B8Q15620 311 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 TMEM211Q6ICI0 200 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 NLRC3Q7RTR2 1065 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 SLC36A1Q7Z2H8 476 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 OR2W3Q7Z3T1 314 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 CXorf67Q86X51 503 aaPredicted RBP15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 FAM46BQ96A09 425 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 OR2A7Q96R45 310 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 GINS4Q9BRT9 223 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 SOX7Q9BT81 388 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 TMPRSS13Q9BYE2 586 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 PRORYQ9H606 182 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 KCNN3Q9UGI6 736 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 SLC7A11Q9UPY5 501 aa15.75■□□□□ 0.11
CCDC88C-203ENST00000389856 IGF2RP11717 2491 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 ZFHX4Q86UP3 3567 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 ZNF14P17017 642 aaPredicted RBP15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 GNG2P59768 71 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 FAM3AP98173 230 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 ZNF92Q03936 586 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 PMPCAQ10713 525 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 MEF2DQ14814 521 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 MPPED2Q15777 294 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 Q6ZTK2 550 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 BIVMQ86UB2 503 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 ZNF584Q8IVC4 421 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 OR5AS1Q8N127 324 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 FAM169BQ8N8A8 192 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 S100A13Q99584 98 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 MGAT4CQ9UBM8 478 aa15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 ZNF629Q9UEG4 869 aaPredicted RBP15.74■□□□□ 0.11
CCDC88C-203ENST00000389856 NCOR2Q9Y618 2525 aa15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 C5orf63A6NC05 138 aa15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 RGS11O94810 467 aa15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 CD74P04233 296 aa15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 TUBG1P23258 451 aa15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 MPZP25189 248 aa15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 AWAT2Q6E213 333 aa15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 SSX8Q7RTT4 187 aa15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 C1orf174Q8IYL3 243 aa15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 OR2T35Q8NGX2 323 aa15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 CNTD2Q9H8S5 307 aa15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 TUBG2Q9NRH3 451 aa15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 ZNF69Q9UC07 566 aa15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 ELF5Q9UKW6 265 aaPredicted RBP15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 MRPS28Q9Y2Q9 187 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-203ENST00000389856 ANKRD34BA5PLL1 514 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 OR5H1A6NKK0 313 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 PYCARD-AS1I3L0S3 204 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 CYB5AP00167 134 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 CHRM2P08172 466 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 TBPP20226 339 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 SNRPD2P62316 118 aaKnown RBP15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 MRGPRGQ86SM5 289 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 KDF1Q8NAX2 398 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 NAXEQ8NCW5 288 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 AQP3Q92482 292 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 SNAPC3Q92966 411 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 PIGTQ969N2 578 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 SEC22CQ9BRL7 303 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 REPIN1Q9BWE0 567 aaKnown RBP15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 BEX1Q9HBH7 125 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 CELSR3Q9NYQ7 3312 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 RAB3DO95716 219 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 NRASP01111 189 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 ANXA7P20073 488 aaKnown RBP15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 ANOS1P23352 680 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 HTR2BP41595 481 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 IDH3GP51553 393 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 GUCA2AQ02747 115 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 KISS1Q15726 138 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 TIMM23BQ5SRD1 257 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 LHFPL2Q6ZUX7 228 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 ANGPTL5Q86XS5 388 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 UXS1Q8NBZ7 420 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 STEAP2Q8NFT2 490 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 OR11H4Q8NGC9 324 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 OR4D6Q8NGJ1 314 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 ZNF75AQ96N20 296 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 CLEC4MQ9H2X3 399 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 ELOVL5Q9NYP7 299 aa15.72■□□□□ 0.11
CCDC88C-203ENST00000389856 ASPMQ8IZT6 3477 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 DISC1C4P0D8 188 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 IGKV3-15P01624 115 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 CD3DP04234 171 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 CCL2P13500 99 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 ACKR3P25106 362 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 QRFPP83859 136 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 GK2Q14410 553 aaPredicted RBP15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 UBE2V2Q15819 145 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 TMEM42Q69YG0 159 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 C3P1Q6ZMU1 363 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 ZNF101Q8IZC7 436 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 OR51S1Q8NGJ8 323 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 KCNG3Q8TAE7 436 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms