RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SKA3Q8IX90 412 aa8.8□□□□□ -1
VPS53-202ENST00000389040 C1orf174Q8IYL3 243 aa8.8□□□□□ -1
VPS53-202ENST00000389040 OR11H7Q8NGC8 314 aa8.8□□□□□ -1
VPS53-202ENST00000389040 OR52N4Q8NGI2 321 aa8.8□□□□□ -1
VPS53-202ENST00000389040 OR13C9Q8NGT0 318 aa8.8□□□□□ -1
VPS53-202ENST00000389040 MARVELD3Q96A59 401 aa8.8□□□□□ -1
VPS53-202ENST00000389040 DACT3Q96B18 629 aaPredicted RBP8.8□□□□□ -1
VPS53-202ENST00000389040 FAM210AQ96ND0 272 aa8.8□□□□□ -1
VPS53-202ENST00000389040 NOX3Q9HBY0 568 aa8.8□□□□□ -1
VPS53-202ENST00000389040 ZNF319Q9P2F9 582 aa8.8□□□□□ -1
VPS53-202ENST00000389040 ITGB1BP2Q9UKP3 347 aa8.8□□□□□ -1
VPS53-202ENST00000389040 FLVCR2Q9UPI3 526 aa8.8□□□□□ -1
VPS53-202ENST00000389040 DEFB108AA8MXU0 73 aa8.8□□□□□ -1
VPS53-202ENST00000389040 SMLR1H3BR10 107 aa8.8□□□□□ -1
VPS53-202ENST00000389040 ARPC1BO15143 372 aaKnown RBP8.8□□□□□ -1
VPS53-202ENST00000389040 SSNA1O43805 119 aa8.8□□□□□ -1
VPS53-202ENST00000389040 BPNT1O95861 308 aa8.8□□□□□ -1
VPS53-202ENST00000389040 SERPINA5P05154 406 aa8.8□□□□□ -1
VPS53-202ENST00000389040 COX5BP10606 129 aa8.8□□□□□ -1
VPS53-202ENST00000389040 RAB1AP62820 205 aa8.8□□□□□ -1
VPS53-202ENST00000389040 HIST1H3AP68431 136 aa8.8□□□□□ -1
VPS53-202ENST00000389040 GALK2Q01415 458 aa8.8□□□□□ -1
VPS53-202ENST00000389040 SCRN3Q0VDG4 424 aa8.8□□□□□ -1
VPS53-202ENST00000389040 NCMAPQ5T1S8 102 aa8.8□□□□□ -1
VPS53-202ENST00000389040 HIST2H3PS2Q5TEC6 136 aa8.8□□□□□ -1
VPS53-202ENST00000389040 OR10K2Q6IF99 312 aa8.8□□□□□ -1
VPS53-202ENST00000389040 ADAM5Q6NVV9 412 aa8.8□□□□□ -1
VPS53-202ENST00000389040 C22orf34Q6ZV56 151 aa8.8□□□□□ -1
VPS53-202ENST00000389040 HIST2H3AQ71DI3 136 aa8.8□□□□□ -1
VPS53-202ENST00000389040 DOK3Q7L591 496 aa8.8□□□□□ -1
VPS53-202ENST00000389040 LRRC18Q8N456 261 aa8.8□□□□□ -1
VPS53-202ENST00000389040 BEST4Q8NFU0 473 aa8.8□□□□□ -1
VPS53-202ENST00000389040 ZFAND1Q8TCF1 268 aa8.8□□□□□ -1
VPS53-202ENST00000389040 GPX8Q8TED1 209 aa8.8□□□□□ -1
VPS53-202ENST00000389040 GAL3ST1Q99999 423 aa8.8□□□□□ -1
VPS53-202ENST00000389040 SCPEP1Q9HB40 452 aa8.8□□□□□ -1
VPS53-202ENST00000389040 BEX1Q9HBH7 125 aa8.8□□□□□ -1
VPS53-202ENST00000389040 PLSCR3Q9NRY6 295 aa8.8□□□□□ -1
VPS53-202ENST00000389040 MYEF2Q9P2K5 600 aaKnown RBP8.8□□□□□ -1
VPS53-202ENST00000389040 ATPIF1Q9UII2 106 aa8.8□□□□□ -1
VPS53-202ENST00000389040 ZNF222Q9UK12 451 aa8.8□□□□□ -1
VPS53-202ENST00000389040 SULT1C2O00338 296 aa8.79□□□□□ -1
VPS53-202ENST00000389040 NDUFB6O95139 128 aa8.79□□□□□ -1
VPS53-202ENST00000389040 LPLP06858 475 aa8.79□□□□□ -1
VPS53-202ENST00000389040 CD3EP07766 207 aa8.79□□□□□ -1
VPS53-202ENST00000389040 SULT1A3P0DMM9 295 aa8.79□□□□□ -1
VPS53-202ENST00000389040 SULT1A4P0DMN0 295 aa8.79□□□□□ -1
VPS53-202ENST00000389040 CD79AP11912 226 aa8.79□□□□□ -1
VPS53-202ENST00000389040 ANXA3P12429 323 aa8.79□□□□□ -1
VPS53-202ENST00000389040 GTF2F2P13984 249 aa8.79□□□□□ -1
VPS53-202ENST00000389040 ANOS1P23352 680 aa8.79□□□□□ -1
VPS53-202ENST00000389040 CD40P25942 277 aa8.79□□□□□ -1
VPS53-202ENST00000389040 ZNF93P35789 620 aaPredicted RBP8.79□□□□□ -1
VPS53-202ENST00000389040 ACTBP60709 375 aa8.79□□□□□ -1
VPS53-202ENST00000389040 ACTG1P63261 375 aa8.79□□□□□ -1
VPS53-202ENST00000389040 TLE4Q04727 773 aa8.79□□□□□ -1
VPS53-202ENST00000389040 TNK1Q13470 666 aa8.79□□□□□ -1
VPS53-202ENST00000389040 GFOD2Q3B7J2 385 aa8.79□□□□□ -1
VPS53-202ENST00000389040 UNQ6126/PRO20091Q6UXV3 157 aa8.79□□□□□ -1
VPS53-202ENST00000389040 PGAP1Q75T13 922 aa8.79□□□□□ -1
VPS53-202ENST00000389040 WFDC8Q8IUA0 241 aa8.79□□□□□ -1
VPS53-202ENST00000389040 OR4C16Q8NGL9 310 aa8.79□□□□□ -1
VPS53-202ENST00000389040 FAM71F1Q96KD3 344 aaPredicted RBP8.79□□□□□ -1
VPS53-202ENST00000389040 TMEM246Q9BRR3 403 aa8.79□□□□□ -1
VPS53-202ENST00000389040 TMEM204Q9BSN7 226 aa8.79□□□□□ -1
VPS53-202ENST00000389040 SOX7Q9BT81 388 aa8.79□□□□□ -1
VPS53-202ENST00000389040 ZNF224Q9NZL3 707 aa8.79□□□□□ -1
VPS53-202ENST00000389040 RAB22AQ9UL26 194 aa8.79□□□□□ -1
VPS53-202ENST00000389040 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.78□□□□□ -1
VPS53-202ENST00000389040 METTL21EPA6NDL7 271 aa8.78□□□□□ -1
VPS53-202ENST00000389040 MEIS3P1A6NDR6 274 aa8.78□□□□□ -1
VPS53-202ENST00000389040 ICMTO60725 284 aa8.78□□□□□ -1
VPS53-202ENST00000389040 CRYAAP02489 173 aa8.78□□□□□ -1
VPS53-202ENST00000389040 HPXP02790 462 aa8.78□□□□□ -1
VPS53-202ENST00000389040 MMP7P09237 267 aaPredicted RBP8.78□□□□□ -1
VPS53-202ENST00000389040 AKAIN1P0CW23 69 aa8.78□□□□□ -1
VPS53-202ENST00000389040 CXCL3P19876 107 aa8.78□□□□□ -1
VPS53-202ENST00000389040 RCVRNP35243 200 aa8.78□□□□□ -1
VPS53-202ENST00000389040 HCFC1P51610 2035 aa8.78□□□□□ -1
VPS53-202ENST00000389040 ECH1Q13011 328 aa8.78□□□□□ -1
VPS53-202ENST00000389040 UNC119Q13432 240 aa8.78□□□□□ -1
VPS53-202ENST00000389040 MOGAT2Q3SYC2 334 aa8.78□□□□□ -1
VPS53-202ENST00000389040 CCDC92Q53HC0 331 aaPredicted RBP8.78□□□□□ -1
VPS53-202ENST00000389040 METTL11BQ5VVY1 283 aa8.78□□□□□ -1
VPS53-202ENST00000389040 RAB12Q6IQ22 244 aa8.78□□□□□ -1
VPS53-202ENST00000389040 ZNF782Q6ZMW2 699 aaPredicted RBP8.78□□□□□ -1
VPS53-202ENST00000389040 ZNF295-AS1Q8N0V1 137 aa8.78□□□□□ -1
VPS53-202ENST00000389040 ASCC1Q8N9N2 400 aaKnown RBP8.78□□□□□ -1
VPS53-202ENST00000389040 ITFG2Q969R8 447 aa8.78□□□□□ -1
VPS53-202ENST00000389040 SEH1LQ96EE3 360 aa8.78□□□□□ -1
VPS53-202ENST00000389040 PLPPR2Q96GM1 343 aa8.78□□□□□ -1
VPS53-202ENST00000389040 PGAM5Q96HS1 289 aa8.78□□□□□ -1
VPS53-202ENST00000389040 HYLS1Q96M11 299 aa8.78□□□□□ -1
VPS53-202ENST00000389040 ZNF75AQ96N20 296 aa8.78□□□□□ -1
VPS53-202ENST00000389040 ING4Q9UNL4 249 aa8.78□□□□□ -1
VPS53-202ENST00000389040 RNF115Q9Y4L5 304 aa8.78□□□□□ -1
VPS53-202ENST00000389040 SPEF1Q9Y4P9 236 aa8.78□□□□□ -1
VPS53-202ENST00000389040 ANKHD1Q8IWZ3 2542 aaKnown RBP8.78□□□□□ -1
VPS53-202ENST00000389040 MEIKINA0A087WXM9 373 aa8.78□□□□□ -1
VPS53-202ENST00000389040 VSTM5A8MXK1 200 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms