RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 PTGFRP43088 359 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 CXCL12P48061 93 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 SHBQ15464 509 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 VWA2Q5GFL6 755 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 LSMEM1Q8N8F7 131 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 TMEM40Q8WWA1 233 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 PIPOXQ9P0Z9 390 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 MCM3APO60318 1980 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 CD40P25942 277 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 TAS2R60P59551 318 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 PRDX4Q13162 271 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 CYR61O00622 381 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 HLA-GP17693 338 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 CLDN15P56746 228 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 DTD1Q8TEA8 209 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 PYCARD-AS1I3L0S3 204 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 CD22P20273 847 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 ZNF121P58317 390 aaPredicted RBP8.39□□□□□ -1.07
VPS13A-203ENST00000360280 FABP5Q01469 135 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 ABHD17CQ6PCB6 329 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 C12orf76Q8N812 135 aaPredicted RBP8.39□□□□□ -1.07
VPS13A-203ENST00000360280 SIRT7Q9NRC8 400 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 TMEM167BQ9NRX6 74 aa8.39□□□□□ -1.07
VPS13A-203ENST00000360280 SCAND1P57086 179 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 RPL18Q07020 188 aaKnown RBP8.38□□□□□ -1.07
VPS13A-203ENST00000360280 IL13RA2Q14627 380 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 FAM78BQ5VT40 261 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 SLC36A1Q7Z2H8 476 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 PITPNC1Q9UKF7 332 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 MFSD2BA6NFX1 497 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 FAM3BP58499 235 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-203ENST00000360280 ZNF766Q5HY98 468 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 SLC16A11Q8NCK7 471 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 ONECUT1Q9UBC0 465 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 MRPS16Q9Y3D3 137 aaKnown RBP8.38□□□□□ -1.07
VPS13A-203ENST00000360280 DNASE2O00115 360 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-203ENST00000360280 SLC17A2O00624 439 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 LANCL1O43813 399 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 P01737 135 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 D2HGDHQ8N465 521 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 ZNF385DQ9H6B1 395 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 SLC2A10O95528 541 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 OR2A5Q96R48 311 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 HAPLN2Q9GZV7 340 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 ANXA10Q9UJ72 324 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 TMEM189-UBE2V1I3L0A0 370 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 SPINK4O60575 86 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 CEBPBP17676 345 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 BSGP35613 385 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 PLP1P60201 277 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 HOXA4Q00056 320 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-203ENST00000360280 ELFN2Q5R3F8 820 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 C12orf54Q6X4T0 127 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 TGIF2LYQ8IUE0 185 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 OR52N5Q8NH56 324 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 MCHR2Q969V1 340 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 ATP23Q9Y6H3 246 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 PRRG2O14669 202 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 GALP22466 123 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 OR8D4Q8NGM9 314 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 TMEM99Q8N816 258 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 APOBEC3DQ96AK3 386 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-203ENST00000360280 INSM2Q96T92 566 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-203ENST00000360280 KIR3DX1Q9H7L2 352 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 ZNF346Q9UL40 294 aaKnown RBP8.38□□□□□ -1.07
VPS13A-203ENST00000360280 TNFRSF1AP19438 455 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 HOXD9P28356 352 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-203ENST00000360280 EMC6Q9BV81 110 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 GPR61Q9BZJ8 451 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 TAF1P21675 1872 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 MASP2O00187 686 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 NDUFB6O95139 128 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 IGHA1P01876 353 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 IGHA2P01877 340 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 PI3P19957 117 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 BSXQ3C1V8 233 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 OXGR1Q96P68 337 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 MAP1BP46821 2468 aaKnown RBP8.38□□□□□ -1.07
VPS13A-203ENST00000360280 LMX1BO60663 402 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 TSPAN13O95857 204 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 CRYBA1P05813 215 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 SLC37A1P57057 533 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 SLC25A26Q70HW3 274 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 PROCRQ9UNN8 238 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 ZNF646O15015 1829 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-203ENST00000360280 POLR2AP24928 1970 aaKnown RBP8.38□□□□□ -1.07
VPS13A-203ENST00000360280 DHRS7CA6NNS2 312 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 OR1L6Q8NGR2 347 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 HCFC1R1Q9NWW0 138 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 BTG2P78543 158 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 DUSP5Q16690 384 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 TP53INP2Q8IXH6 220 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 TTC9BQ8N6N2 239 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 FGF21Q9NSA1 209 aa8.38□□□□□ -1.07
VPS13A-203ENST00000360280 LINC00303Q3SY05 128 aa8.37□□□□□ -1.07
VPS13A-203ENST00000360280 C1orf220Q5T0J3 134 aa8.37□□□□□ -1.07
VPS13A-203ENST00000360280 RBM45Q8IUH3 476 aaKnown RBP8.37□□□□□ -1.07
VPS13A-203ENST00000360280 PTGESO14684 152 aa8.37□□□□□ -1.07
VPS13A-203ENST00000360280 IL2RAP01589 272 aa8.37□□□□□ -1.07
VPS13A-203ENST00000360280 HSF5Q4G112 596 aaPredicted RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms