RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 SPARTQ8N0X7 666 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 PRSS35Q8N3Z0 413 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 SCCPDHQ8NBX0 429 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 BPIFB6Q8NFQ5 453 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 DACT3Q96B18 629 aaPredicted RBP13.19□□□□□ -0.3
CLN3-201ENST00000333496 DCUN1D5Q9BTE7 237 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 C7orf69Q9H7B7 122 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 AMBNQ9NP70 447 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 ACOXLQ9NUZ1 547 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 GNG8Q9UK08 70 aa13.19□□□□□ -0.3
CLN3-201ENST00000333496 ATRQ13535 2644 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 TRAV38-1A0A0B4J264 116 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 TMEM210A6NLX4 147 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 MRPS14O60783 128 aaKnown RBP13.18□□□□□ -0.3
CLN3-201ENST00000333496 MTRF1O75570 445 aaKnown RBP13.18□□□□□ -0.3
CLN3-201ENST00000333496 FCN3O75636 299 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 ZNF12P17014 697 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 ADRA2CP18825 462 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 CCL1P22362 96 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 GPM6AP51674 278 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 ODF4Q2M2E3 257 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 CEACAM21Q3KPI0 293 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 WDR38Q5JTN6 314 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 TMEM42Q69YG0 159 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 OR8B3Q8NGG8 313 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 BORCS5Q969J3 196 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 MUL1Q969V5 352 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 SEH1LQ96EE3 360 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 OR8B2Q96RD0 313 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 PALMDQ9NP74 551 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 PCDHGB1Q9Y5G3 927 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 INSIG2Q9Y5U4 225 aa13.18□□□□□ -0.3
CLN3-201ENST00000333496 IGHV3OR15-7A0A075B7D8 119 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 DAPL1A0PJW8 107 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 A6NIN4 97 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 SNTNA6NMZ2 147 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 SRRM5B3KS81 715 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 ZNF732B4DXR9 585 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 XPNPEP2O43895 674 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 GYPAP02724 150 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 KIR3DL2P43630 455 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 PITPNBP48739 271 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 OR12D2P58182 307 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 ACTC1P68032 377 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 ACTA1P68133 377 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 SMN1Q16637 294 aaKnown RBP13.17□□□□□ -0.3
CLN3-201ENST00000333496 WDR25Q64LD2 544 aaPredicted RBP13.17□□□□□ -0.3
CLN3-201ENST00000333496 MOB3CQ70IA8 216 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 NLRC3Q7RTR2 1065 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 ACBD7Q8N6N7 88 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 PPP1R14BQ96C90 147 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 ZNF649Q9BS31 505 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 OR51I2Q9H344 312 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 SCN3BQ9NY72 215 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 ENPP5Q9UJA9 477 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 TPRKBQ9Y3C4 175 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 H3BSH0 61 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 NRASP01111 189 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 GNG3P63215 75 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 SRSF2Q01130 221 aaKnown RBP13.17□□□□□ -0.3
CLN3-201ENST00000333496 KCNJ8Q15842 424 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 DOK3Q7L591 496 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 DRAXINQ8NBI3 349 aaPredicted RBP13.17□□□□□ -0.3
CLN3-201ENST00000333496 OR5A2Q8NGI9 324 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 OR10Z1Q8NGY1 313 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 Q96MT0 163 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 HIST1H2AAQ96QV6 131 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 WDR13Q9H1Z4 485 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 SMURF1Q9HCE7 757 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 TRIM36Q9NQ86 728 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 MRPS18AQ9NVS2 196 aaKnown RBP13.17□□□□□ -0.3
CLN3-201ENST00000333496 CLN8Q9UBY8 286 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 OR5V1Q9UGF6 321 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 METRNQ9UJH8 293 aa13.17□□□□□ -0.3
CLN3-201ENST00000333496 DHRS7CA6NNS2 312 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 ADAM20O43506 726 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 RHBDL1O75783 438 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 FSHBP01225 129 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 IGHA1P01876 353 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 PAX8Q06710 450 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 PLCXD3Q63HM9 321 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 FAM220AQ7Z4H9 259 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 C1QL2Q7Z5L3 287 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 KCTD20Q7Z5Y7 419 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 LHFPL3Q86UP9 236 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 RDH10Q8IZV5 341 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 TBC1D15Q8TC07 691 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 GPR173Q9NS66 373 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 PLCXD1Q9NUJ7 323 aa13.16□□□□□ -0.3
CLN3-201ENST00000333496 PAK1IP1Q9NWT1 392 aaPredicted RBP13.16□□□□□ -0.3
CLN3-201ENST00000333496 IGHV2-70DA0A0C4DH43 119 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 A0A1B0GW55 424 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 PTGES3LE9PB15 166 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 AKR7A2O43488 359 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 NDUFA2O43678 99 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 HTR1AP08908 422 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 DUX4L2P0CJ85 424 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 DUX4L3P0CJ86 424 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 DUX4L4P0CJ87 422 aa13.15□□□□□ -0.3
CLN3-201ENST00000333496 DUX4L5P0CJ88 424 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms