RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 C6orf106Q9H6K1 298 aaPredicted RBP15.53■□□□□ 0.08
SYNPO-201ENST00000307662 OPN4Q9UHM6 478 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 ZNF835Q9Y2P0 537 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 A0A096LPE4 126 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 A0A1W2PPZ6 126 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 FAM24AA6NFZ4 105 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 ZNF737O75373 536 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 CAPZBP47756 277 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 TMEM33P57088 247 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 CLN3Q13286 438 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 IRF3Q14653 427 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 ADPRHL1Q8NDY3 354 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 MIOXQ9UGB7 285 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 IGHV3-15A0A0B4J1V0 119 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 ARG1P05089 322 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 PNRC1Q12796 327 aaPredicted RBP15.53■□□□□ 0.08
SYNPO-201ENST00000307662 KISS1Q15726 138 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 ZNF79Q15937 498 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 C9orf152Q5JTZ5 239 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 PARM1Q6UWI2 310 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 ZNF793Q6ZN11 406 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 OR5M9Q8NGP3 310 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 CLDN23Q96B33 292 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 GALMQ96C23 342 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 NDFIP1Q9BT67 221 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 IL21Q9HBE4 155 aa15.53■□□□□ 0.08
SYNPO-201ENST00000307662 IGHV3-64DA0A0J9YX35 117 aa15.52■□□□□ 0.08
SYNPO-201ENST00000307662 CXorf51AA0A1B0GTR3 108 aa15.52■□□□□ 0.08
SYNPO-201ENST00000307662 CRYM-AS1A6NIL9 109 aa15.52■□□□□ 0.08
SYNPO-201ENST00000307662 C21orf58P58505 322 aa15.52■□□□□ 0.08
SYNPO-201ENST00000307662 GPR87Q9BY21 358 aa15.52■□□□□ 0.08
SYNPO-201ENST00000307662 MS4A7Q9GZW8 240 aaPredicted RBP15.52■□□□□ 0.08
SYNPO-201ENST00000307662 DNAJB12Q9NXW2 375 aaKnown RBP15.52■□□□□ 0.08
SYNPO-201ENST00000307662 B4GALT1P15291 398 aa15.52■□□□□ 0.08
SYNPO-201ENST00000307662 GNB1P62873 340 aa15.52■□□□□ 0.08
SYNPO-201ENST00000307662 TRILQ7L0X0 811 aa15.52■□□□□ 0.08
SYNPO-201ENST00000307662 ROBO4Q8WZ75 1007 aa15.52■□□□□ 0.08
SYNPO-201ENST00000307662 BOD1Q96IK1 185 aa15.52■□□□□ 0.08
SYNPO-201ENST00000307662 C3orf85A0A1B0GTC6 90 aa15.52■□□□□ 0.07
SYNPO-201ENST00000307662 MED19A0JLT2 244 aaPredicted RBP15.52■□□□□ 0.07
SYNPO-201ENST00000307662 SLC38A11Q08AI6 406 aa15.52■□□□□ 0.07
SYNPO-201ENST00000307662 TRIB1Q96RU8 372 aa15.52■□□□□ 0.07
SYNPO-201ENST00000307662 IGF2P01344 180 aa15.52■□□□□ 0.07
SYNPO-201ENST00000307662 MYOGP15173 224 aa15.52■□□□□ 0.07
SYNPO-201ENST00000307662 PPIAP62937 165 aaKnown RBP15.52■□□□□ 0.07
SYNPO-201ENST00000307662 INSM1Q01101 510 aaPredicted RBP15.52■□□□□ 0.07
SYNPO-201ENST00000307662 PWWP2BQ6NUJ5 590 aa15.52■□□□□ 0.07
SYNPO-201ENST00000307662 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.52■□□□□ 0.07
SYNPO-201ENST00000307662 ISOC2Q96AB3 205 aa15.52■□□□□ 0.07
SYNPO-201ENST00000307662 WDR34Q96EX3 536 aa15.52■□□□□ 0.07
SYNPO-201ENST00000307662 GNB4Q9HAV0 340 aa15.52■□□□□ 0.07
SYNPO-201ENST00000307662 TCAPO15273 167 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 CDC14BO60729 498 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 PIAS2O75928 621 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 HPXP02790 462 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 AGFG1P52594 562 aaKnown RBP15.51■□□□□ 0.07
SYNPO-201ENST00000307662 FA2HQ7L5A8 372 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 GON4LQ3T8J9 2241 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 A0A1B0GTH9 108 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 KIAA1324LA8MWY0 1029 aaPredicted RBP15.51■□□□□ 0.07
SYNPO-201ENST00000307662 CXCL13O43927 109 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 PTGFRP43088 359 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 LGALS4P56470 323 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 IFITM3Q01628 133 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 RBPJQ06330 500 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 RNASEKQ6P5S7 137 aaKnown RBP15.51■□□□□ 0.07
SYNPO-201ENST00000307662 DEGS2Q6QHC5 323 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 VN1R1Q9GZP7 353 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 Q9N2K0 584 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 ELF5Q9UKW6 265 aaPredicted RBP15.51■□□□□ 0.07
SYNPO-201ENST00000307662 SDK1Q7Z5N4 2213 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 RREB1Q92766 1687 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 EPPINO95925 133 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 CRYBA1P05813 215 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 FBP1P09467 338 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 MLF2Q15773 248 aaPredicted RBP15.51■□□□□ 0.07
SYNPO-201ENST00000307662 THSD4Q6ZMP0 1018 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 MRGPREQ86SM8 312 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 MYPOPQ86VE0 399 aaPredicted RBP15.51■□□□□ 0.07
SYNPO-201ENST00000307662 OR10X1Q8NGY0 326 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 MRPS24Q96EL2 167 aaKnown RBP15.51■□□□□ 0.07
SYNPO-201ENST00000307662 PACRGQ96M98 296 aaPredicted RBP15.51■□□□□ 0.07
SYNPO-201ENST00000307662 TWSG1Q9GZX9 223 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 LSM2Q9Y333 95 aaKnown RBP15.51■□□□□ 0.07
SYNPO-201ENST00000307662 ZNF98A6NK75 572 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 FCN1O00602 326 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 TNFSF11O14788 317 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 CRHP06850 196 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 TIAL1Q01085 375 aaKnown RBP eCLIP15.51■□□□□ 0.07
SYNPO-201ENST00000307662 IL22RA2Q969J5 263 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 TSPAN32Q96QS1 320 aa15.51■□□□□ 0.07
SYNPO-201ENST00000307662 DUXBA0A1W2PPF3 345 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 OGG1O15527 345 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 CYC1P08574 325 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 RPS23P62266 143 aaKnown RBP15.5■□□□□ 0.07
SYNPO-201ENST00000307662 ZNF154Q13106 437 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 TMEM240Q5SV17 173 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 LYPD8Q6UX82 237 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 THOC3Q96J01 351 aaKnown RBP15.5■□□□□ 0.07
SYNPO-201ENST00000307662 EGLN1Q9GZT9 426 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms