RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 MMP9P14780 707 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 UCP2P55851 309 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.88□□□□□ -0.51
SKA3-201ENST00000298260 SLC22A24Q8N4F4 322 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 OR52M1Q8NGK5 317 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 OR51E1Q8TCB6 317 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 HPSE2Q8WWQ2 592 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 TOMM40LQ969M1 308 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 ADOQ96SZ5 270 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 ZFYVE21Q9BQ24 234 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 ZBP1Q9H171 429 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 MEMO1Q9Y316 297 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 RBFOX3A6NFN3 312 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 A6NNC1 897 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 STMND1H3BQB6 276 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 PTBP3O95758 552 aaKnown RBP11.88□□□□□ -0.51
SKA3-201ENST00000298260 TTRP02766 147 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 SFTPCP11686 197 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 FUT3P21217 361 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 TNFRSF9Q07011 255 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 TMEM176BQ3YBM2 270 aaPredicted RBP11.88□□□□□ -0.51
SKA3-201ENST00000298260 LYZL2Q7Z4W2 148 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 C1QL2Q7Z5L3 287 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 PEG10Q86TG7 708 aaKnown RBP11.88□□□□□ -0.51
SKA3-201ENST00000298260 WFIKKN2Q8TEU8 576 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 PBDC1Q9BVG4 233 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 BCO1Q9HAY6 547 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 LYRM4Q9HD34 91 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 FOXD3Q9UJU5 478 aaPredicted RBP11.88□□□□□ -0.51
SKA3-201ENST00000298260 TP53TG5Q9Y2B4 290 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 B3GALT5Q9Y2C3 310 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 MRPS28Q9Y2Q9 187 aaKnown RBP11.88□□□□□ -0.51
SKA3-201ENST00000298260 A8MVM7 634 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 TMEM14DPA8MWL7 114 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 HCRTR2O43614 444 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 PGA3P0DJD8 388 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 ZNF25P17030 456 aaPredicted RBP11.87□□□□□ -0.51
SKA3-201ENST00000298260 NUBP1P53384 320 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 SUMF1Q8NBK3 374 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 TIMM29Q9BSF4 260 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 FAM60AQ9NP50 221 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 CBLN4Q9NTU7 201 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 PADI1Q9ULC6 663 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 ARHGAP21Q5T5U3 1957 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 C9J4A7 227 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 ZNF878C9JN71 531 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 RPL36A-HNRNPH2H7BZ11 118 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 AHSA1O95433 338 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 PNMTP11086 282 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 CD200P41217 278 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 AFF3P51826 1226 aaKnown RBP11.87□□□□□ -0.51
SKA3-201ENST00000298260 SEC13P55735 322 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 RAB38P57729 211 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 LHFPL1Q86WI0 220 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 DDA1Q9BW61 102 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 SNHG12Q9BXW3 62 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 VN1R1Q9GZP7 353 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 IGFLR1Q9H665 355 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 KIR3DX1Q9H7L2 352 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 SIRT7Q9NRC8 400 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 B3GALT1Q9Y5Z6 326 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 WDFY4Q6ZS81 3184 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 CDC14BO60729 498 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 NXPH3O95157 252 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 BPNT1O95861 308 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 H2BFMP0C1H6 154 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 SEC11BP0C7V7 166 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 ZNF10P21506 573 aaPredicted RBP11.87□□□□□ -0.51
SKA3-201ENST00000298260 PLA2G5P39877 138 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 PCP4P48539 62 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 RPL27P61353 136 aaKnown RBP11.87□□□□□ -0.51
SKA3-201ENST00000298260 VAX1Q5SQQ9 334 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 LANCL3Q6ZV70 420 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 NKAIN3Q8N8D7 197 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 KDF1Q8NAX2 398 aaPredicted RBP11.87□□□□□ -0.51
SKA3-201ENST00000298260 THRSPQ92748 146 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 DAZLQ92904 295 aaKnown RBP11.87□□□□□ -0.51
SKA3-201ENST00000298260 PTX4Q96A99 478 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 FAM210BQ96KR6 192 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 ZNF2Q9BSG1 426 aaPredicted RBP11.87□□□□□ -0.51
SKA3-201ENST00000298260 TMEM59Q9BXS4 323 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 OR10A5Q9H207 317 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 LIME1Q9H400 295 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 ZNF581Q9P0T4 197 aa11.87□□□□□ -0.51
SKA3-201ENST00000298260 CHD3Q12873 2000 aaKnown RBP11.86□□□□□ -0.51
SKA3-201ENST00000298260 SLC37A1P57057 533 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 RUNX1Q01196 453 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 SGCGQ13326 291 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 HIKESHIQ53FT3 197 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 EMC4Q5J8M3 183 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 WDR25Q64LD2 544 aaPredicted RBP11.86□□□□□ -0.51
SKA3-201ENST00000298260 TMEM123Q8N131 208 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 OR14C36Q8NHC7 312 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 SPPL3Q8TCT6 385 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 FAM71F1Q96KD3 344 aaPredicted RBP11.86□□□□□ -0.51
SKA3-201ENST00000298260 C1orf147Q96MC9 270 aaPredicted RBP11.86□□□□□ -0.51
SKA3-201ENST00000298260 GPER1Q99527 375 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 C8orf33Q9H7E9 229 aaPredicted RBP11.86□□□□□ -0.51
SKA3-201ENST00000298260 C1orf123Q9NWV4 160 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 MED29Q9NX70 200 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 158.9 ms