RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 ALG5Q9Y673 324 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 DOCK7Q96N67 2140 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 K7ENP7 123 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 TXNL1O43396 289 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 CIDEAO60543 219 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 NOS1APO75052 506 aaPredicted RBP12.34□□□□□ -0.43
C9orf3-202ENST00000297979 NRASP01111 189 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 TRAPPC2P0DI81 140 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 TRAPPC2BP0DI82 140 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 ACTBP60709 375 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 ACTG1P63261 375 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 FAM189A2Q15884 450 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 TMEM255AQ5JRV8 349 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 ZBTB37Q5TC79 503 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 VWA1Q6PCB0 445 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 INO80CQ6PI98 192 aaPredicted RBP12.34□□□□□ -0.43
C9orf3-202ENST00000297979 AQP3Q92482 292 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 SEH1LQ96EE3 360 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 RNF170Q96K19 258 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 CST11Q9H112 138 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 LPAR5Q9H1C0 372 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 ZMAT3Q9HA38 289 aaKnown RBP12.34□□□□□ -0.43
C9orf3-202ENST00000297979 DKK4Q9UBT3 224 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 ZNF816-ZNF321PA0A0X1KG74 233 aa12.33□□□□□ -0.43
C9orf3-202ENST00000297979 MEIS3P1A6NDR6 274 aa12.33□□□□□ -0.43
C9orf3-202ENST00000297979 TMEM235A6NFC5 223 aa12.33□□□□□ -0.43
C9orf3-202ENST00000297979 CRTAPO75718 401 aaPredicted RBP12.33□□□□□ -0.43
C9orf3-202ENST00000297979 RAD51DO75771 328 aa12.33□□□□□ -0.43
C9orf3-202ENST00000297979 HLA-DMAP28067 261 aa12.33□□□□□ -0.43
C9orf3-202ENST00000297979 FAUP35544 74 aaKnown RBP12.33□□□□□ -0.43
C9orf3-202ENST00000297979 VEGFCP49767 419 aa12.33□□□□□ -0.43
C9orf3-202ENST00000297979 RAB25P57735 213 aa12.33□□□□□ -0.43
C9orf3-202ENST00000297979 MALLQ13021 153 aa12.33□□□□□ -0.43
C9orf3-202ENST00000297979 ZNF260Q3ZCT1 412 aa12.33□□□□□ -0.43
C9orf3-202ENST00000297979 SLC22A6Q4U2R8 563 aa12.33□□□□□ -0.43
C9orf3-202ENST00000297979 CYB5R2Q6BCY4 276 aa12.33□□□□□ -0.43
C9orf3-202ENST00000297979 ST8SIA2Q92186 375 aa12.33□□□□□ -0.43
C9orf3-202ENST00000297979 NUP50Q9UKX7 468 aa12.33□□□□□ -0.43
C9orf3-202ENST00000297979 ING4Q9UNL4 249 aa12.33□□□□□ -0.43
C9orf3-202ENST00000297979 CCNKO75909 580 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 SERPINA5P05154 406 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 CHRM2P08172 466 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 CASP6P55212 293 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 MTCP1P56278 107 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 SFRP4Q6FHJ7 346 aaPredicted RBP12.33□□□□□ -0.44
C9orf3-202ENST00000297979 Q6ZTK2 550 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 CHST4Q8NCG5 386 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 OR10R2Q8NGX6 335 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 CMBLQ96DG6 245 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 MS4A3Q96HJ5 214 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 S100A13Q99584 98 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 C12orf57Q99622 126 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 NICN1Q9BSH3 213 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 REPIN1Q9BWE0 567 aaKnown RBP12.33□□□□□ -0.44
C9orf3-202ENST00000297979 BANF2Q9H503 90 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 ZC4H2Q9NQZ6 224 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 MCUBQ9NWR8 336 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 TP53TG5Q9Y2B4 290 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 MBD3L4A6NDZ8 208 aaPredicted RBP12.33□□□□□ -0.44
C9orf3-202ENST00000297979 MBD3L3A6NE82 208 aaPredicted RBP12.33□□□□□ -0.44
C9orf3-202ENST00000297979 WIPF3A6NGB9 483 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 MBD3L5A6NJ08 208 aaPredicted RBP12.33□□□□□ -0.44
C9orf3-202ENST00000297979 LYZL6O75951 148 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 DHFRP00374 187 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 UBE2NP61088 152 aaKnown RBP12.33□□□□□ -0.44
C9orf3-202ENST00000297979 GK2Q14410 553 aaPredicted RBP12.33□□□□□ -0.44
C9orf3-202ENST00000297979 TBR1Q16650 682 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 FAM180AQ6UWF9 173 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 LHFPL2Q6ZUX7 228 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 MRPL21Q7Z2W9 205 aaKnown RBP12.33□□□□□ -0.44
C9orf3-202ENST00000297979 C1QL2Q7Z5L3 287 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 MBD3L2Q8NHZ7 208 aaPredicted RBP12.33□□□□□ -0.44
C9orf3-202ENST00000297979 ZNF75AQ96N20 296 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 TECTBQ96PL2 329 aa12.33□□□□□ -0.44
C9orf3-202ENST00000297979 URM1Q9BTM9 101 aaKnown RBP12.33□□□□□ -0.44
C9orf3-202ENST00000297979 A0A1W2PP11 408 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 FAM230AA0A1W2PPH8 454 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 GTF2F2P13984 249 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 PER3P56645 1201 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 ZP1P60852 638 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 FOXF2Q12947 444 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 FAAP20Q6NZ36 180 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 CDH24Q86UP0 819 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 SLC30A7Q8NEW0 376 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 BORCS8Q96FH0 119 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 ELF5Q9UKW6 265 aaPredicted RBP12.32□□□□□ -0.44
C9orf3-202ENST00000297979 A0A0A6YYD4 124 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 COX5AP20674 150 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 RBP2P50120 134 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 GABRA6Q16445 453 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 CDNFQ49AH0 187 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 PIGCQ92535 297 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 OPA3Q9H6K4 179 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 PLSCR4Q9NRQ2 329 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 STARD10Q9Y365 291 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 DCHS1Q96JQ0 3298 aa12.32□□□□□ -0.44
C9orf3-202ENST00000297979 WDR1O75083 606 aa12.31□□□□□ -0.44
C9orf3-202ENST00000297979 NGFP01138 241 aa12.31□□□□□ -0.44
C9orf3-202ENST00000297979 TPOP07202 933 aa12.31□□□□□ -0.44
C9orf3-202ENST00000297979 MELTFP08582 738 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms