RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 OR14C36Q8NHC7 312 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ZCCHC14Q8WYQ9 949 aaKnown RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 GJD4Q96KN9 370 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 RSRP1Q9BUV0 290 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM30AQ9NV96 361 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 TUBD1Q9UJT1 453 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ADAMTS4O75173 837 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 CCR5P51681 352 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 MVDP53602 400 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 CLN3Q13286 438 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 IGFBP7Q16270 282 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF542PQ5EBM4 170 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 C2orf73Q8N5S3 287 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ZBTB34Q8NCN2 500 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 COPS9Q8WXC6 57 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 BOCQ9BWV1 1114 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 DEFB126Q9BYW3 111 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 GLIS2Q9BZE0 524 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 HEYLQ9NQ87 328 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 POLDIP2Q9Y2S7 368 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 CCDC88CQ9P219 2028 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 A0A1W2PPE2 198 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 PRAMEF25A6NGN4 478 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 DEGS1O15121 323 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 FRS3O43559 492 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 PRAMEF4O60810 478 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 F3P13726 295 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 AGAP20933 346 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 MPZP25189 248 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 PDCD1LG2Q9BQ51 273 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 NDFIP1Q9BT67 221 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ELOVL1Q9BW60 279 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF17P17021 662 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 CEBPDP49716 269 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 LMAN2Q12907 356 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM176BQ3YBM2 270 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 FIGLAQ6QHK4 219 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 MAMSTRQ6ZN01 415 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 TAS1R1Q7RTX1 841 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 MRGPREQ86SM8 312 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM156Q8N614 296 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 PLPP7Q8NBV4 271 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 IRF7Q92985 503 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 IMMP2LQ96T52 175 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ALKBH7Q9BT30 221 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 MED20Q9H944 212 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 IL21Q9HBE4 155 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 TAS2R4Q9NYW5 299 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 PIPOXQ9P0Z9 390 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 CROCCQ5TZA2 2017 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ROBO1Q9Y6N7 1651 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 MARCH11A6NNE9 402 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM262E9PQX1 116 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 SSSCA1O60232 199 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 VDAC1P21796 283 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 CA5BP1Q8WTZ4 195 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 FAM103A1Q9BTL3 118 aaKnown RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 SPHK2Q9NRA0 654 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 TIMM8BQ9Y5J9 83 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 A0A1B0GU03 582 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF891A8MT65 544 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 DLEU1O43261 78 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 HPXP02790 462 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 GUSBP08236 651 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 H1FNTQ75WM6 255 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF142P52746 1687 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ANKRD12Q6UB98 2062 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 FITM1A5D6W6 292 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 RHBDL1O75783 438 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 CCR2P41597 374 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 KCNMB1Q16558 191 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 SAMD13Q5VXD3 122 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 VWA1Q6PCB0 445 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 LINC00346Q8IVM7 164 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 IL22RA2Q969J5 263 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 RHNO1Q9BSD3 238 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 LAT2Q9GZY6 243 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 ADAMTS5Q9UNA0 930 aa4.2□□□□□ -1.74
SCN1A-220ENST00000641603 GPR37O15354 613 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 PRICKLE3O43900 615 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 CD74P04233 296 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 OR4Q2P0C623 313 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 NPPBP16860 134 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM207Q6UWW9 146 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 GPRIN1Q7Z2K8 1008 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 SCD5Q86SK9 330 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 OR5C1Q8NGR4 320 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 CNTD2Q9H8S5 307 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 SIGLEC7Q9Y286 467 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 TIMM9Q9Y5J7 89 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 INSL5Q9Y5Q6 135 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 PRSS37A4D1T9 235 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A26D6RGX4 464 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 ADRA2AP08913 450 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 CDC34P49427 236 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 SPATA45Q537H7 98 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF468Q5VIY5 522 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 PARM1Q6UWI2 310 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 CXCL17Q6UXB2 119 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 CLEC18BQ6UXF7 455 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms