RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SLCO1B1Q9Y6L6 691 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 PLXNB2O15031 1838 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 A0A0G2JLM5 398 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 E5RGE8 158 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 CEACAM1P13688 526 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 RPL29P47914 159 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 FAM106AQ4KMX7 169 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 FDX2Q6P4F2 183 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 GLCCI1Q86VQ1 547 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 WFDC8Q8IUA0 241 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ADAD2Q8NCV1 583 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 OR52M1Q8NGK5 317 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 OR5B3Q8NH48 314 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 FLYWCH2Q96CP2 140 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 PCED1BQ96HM7 432 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ZNF778Q96MU6 729 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 EBF4Q9BQW3 602 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 MAP1LC3CQ9BXW4 147 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 METTL9Q9H1A3 318 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 RAXQ9Y2V3 346 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 SF3B6Q9Y3B4 125 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 OR1A2Q9Y585 309 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 CORINQ9Y5Q5 1042 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 LOC285095A0A1B0GVY8 99 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 M0R1B8 84 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 DEGS1O15121 323 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 OR2A4O95047 310 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 HTR1EP28566 365 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 SFTPDP35247 375 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 ASIPP42127 132 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 DLX1P56177 255 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 STARD6P59095 220 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 HYAL4Q2M3T9 481 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 OR2G6Q5TZ20 316 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 RPUSD3Q6P087 351 aaKnown RBP2.53□□□□□ -2.01
SCN1A-219ENST00000641575 H2BFWTQ7Z2G1 175 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 FBXL16Q8N461 479 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 PNPLA1Q8N8W4 532 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 OR5W2Q8NH69 310 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 OR5AK2Q8NH90 309 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 LHFPL5Q8TAF8 219 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 Q8WTZ3 238 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 SLC45A3Q96JT2 553 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 OR10C1Q96KK4 312 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 MRGPRX3Q96LB0 322 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 OR2A7Q96R45 310 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 MGLLQ99685 303 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 GABARAPL1Q9H0R8 117 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 TAC3Q9UHF0 121 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 IL17BQ9UHF5 180 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 CD84Q9UIB8 345 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 HHLA2Q9UM44 414 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 TEX48A0A1B0GUV7 120 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 hADV38S2A0JD32 116 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 PIRO00625 290 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 COCHO43405 550 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 WDR1O75083 606 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 RHBDL1O75783 438 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 RRASP10301 218 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 MDH2P40926 338 aaKnown RBP2.53□□□□□ -2.01
SCN1A-219ENST00000641575 AKR1C3P42330 323 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 RBP2P50120 134 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 ATP4BP51164 291 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 SSBP1Q04837 148 aaKnown RBP2.53□□□□□ -2.01
SCN1A-219ENST00000641575 PIGFQ07326 219 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF415Q09FC8 603 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 ELOBQ15370 118 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 CPEB4Q17RY0 729 aaKnown RBP eCLIP2.53□□□□□ -2.01
SCN1A-219ENST00000641575 C1QTNF12Q5T7M4 302 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 AADACL3Q5VUY0 350 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 MYPOPQ86VE0 399 aaPredicted RBP2.53□□□□□ -2.01
SCN1A-219ENST00000641575 IRF2BP1Q8IU81 584 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 OR52N2Q8NGI0 321 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 TSKUQ8WUA8 353 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 RTN4IP1Q8WWV3 396 aaPredicted RBP2.53□□□□□ -2.01
SCN1A-219ENST00000641575 MSLNLQ96KJ4 702 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 GATA5Q9BWX5 397 aaPredicted RBP2.53□□□□□ -2.01
SCN1A-219ENST00000641575 ACTR3CQ9C0K3 210 aaPredicted RBP2.53□□□□□ -2.01
SCN1A-219ENST00000641575 FLVCR1Q9Y5Y0 555 aa2.53□□□□□ -2.01
SCN1A-219ENST00000641575 AQP7P3A6NL99 342 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TYROBPO43914 113 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TMIGD3P0DMS9 266 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 PTGFRP43088 359 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 CEACAM7Q14002 265 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 IRF4Q15306 451 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 CLLU1Q5K131 121 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 FBXW12Q6X9E4 464 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR10G3Q8NGC4 313 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR1N2Q8NGR9 330 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TEAD3Q99594 435 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SLC25A33Q9BSK2 321 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TAF9BQ9HBM6 251 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 LANCL2Q9NS86 450 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 BPTFQ12830 3046 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ARAP2Q8WZ64 1704 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 HSPB6O14558 160 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SSSCA1O60232 199 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 KLF7O75840 302 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR2J3O76001 311 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 PMS2P2O95744 297 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms