RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 C4orf17Q53FE4 359 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 PYDC2Q56P42 97 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 TMEM255AQ5JRV8 349 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 PRR14LQ5THK1 2151 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 MBNL2Q5VZF2 373 aaKnown RBP15.79■□□□□ 0.12
CLN3-254ENST00000637050 OR10K2Q6IF99 312 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 PYHIN1Q6K0P9 492 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 OR2W3Q7Z3T1 314 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 BIVMQ86UB2 503 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 HPSE2Q8WWQ2 592 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 WFIKKN1Q96NZ8 548 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 FGF23Q9GZV9 251 aaPredicted RBP15.79■□□□□ 0.12
CLN3-254ENST00000637050 RABL2AQ9UBK7 228 aaPredicted RBP15.79■□□□□ 0.12
CLN3-254ENST00000637050 GHRLQ9UBU3 117 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 RAB22AQ9UL26 194 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 RABL2BQ9UNT1 228 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 SPEF1Q9Y4P9 236 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 PQLC2LA1A4F0 135 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 NKX2-6A6NCS4 301 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 CTAG2O75638 210 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 CDK2P24941 298 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 MMP15P51511 669 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 ATP1B3P54709 279 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 NKX6-1P78426 367 aaPredicted RBP15.78■□□□□ 0.12
CLN3-254ENST00000637050 UNC119Q13432 240 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 CDSNQ15517 529 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 IGFBP7Q16270 282 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 ZNF718Q3SXZ3 478 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 TMEM108Q6UXF1 575 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 C1QL2Q7Z5L3 287 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 WFDC8Q8IUA0 241 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 OR5D18Q8NGL1 313 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 CA5BP1Q8WTZ4 195 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 TNFAIP8L1Q8WVP5 186 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 ITPKCQ96DU7 683 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 ZC3HAV1LQ96H79 300 aaKnown RBP15.78■□□□□ 0.12
CLN3-254ENST00000637050 ABHD1Q96SE0 405 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 ABCB10Q9NRK6 738 aa15.78■□□□□ 0.12
CLN3-254ENST00000637050 MYEF2Q9P2K5 600 aaKnown RBP15.78■□□□□ 0.12
CLN3-254ENST00000637050 KITLGP21583 273 aa15.77■□□□□ 0.12
CLN3-254ENST00000637050 PTAFRP25105 342 aa15.77■□□□□ 0.12
CLN3-254ENST00000637050 MNDAP41218 407 aa15.77■□□□□ 0.12
CLN3-254ENST00000637050 SNTB2Q13425 540 aaKnown RBP15.77■□□□□ 0.12
CLN3-254ENST00000637050 BAK1Q16611 211 aa15.77■□□□□ 0.12
CLN3-254ENST00000637050 ALKBH6Q3KRA9 238 aa15.77■□□□□ 0.12
CLN3-254ENST00000637050 OR5A2Q8NGI9 324 aa15.77■□□□□ 0.12
CLN3-254ENST00000637050 OR5P3Q8WZ94 311 aa15.77■□□□□ 0.12
CLN3-254ENST00000637050 PURGQ9UJV8 347 aaKnown RBP15.77■□□□□ 0.12
CLN3-254ENST00000637050 ITGB1BP2Q9UKP3 347 aa15.77■□□□□ 0.12
CLN3-254ENST00000637050 ATP6V1G2-DDX39BF2Z307 99 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 XRCC3O43542 346 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 TPPPO94811 219 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 CA6P23280 308 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 GLRXP35754 106 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 PITPNAQ00169 270 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 STEAP3Q658P3 488 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 RGS7BPQ6MZT1 257 aaPredicted RBP15.76■□□□□ 0.11
CLN3-254ENST00000637050 ASCL4Q6XD76 172 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 LYSMD2Q8IV50 215 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 IZUMO1Q8IYV9 350 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 OR8H2Q8N162 312 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 KCNG3Q8TAE7 436 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 LRRC46Q96FV0 321 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 KCNJ16Q9NPI9 418 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 C14orf119Q9NWQ9 140 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 COL6A6A6NMZ7 2263 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 DPRXA6NFQ7 191 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 CSF3P09919 207 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 GCH1P30793 250 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 PTH2RP49190 550 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 FABP6P51161 128 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 TMEM69Q5SWH9 247 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 Q8N402 240 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 TMEM104Q8NE00 496 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 DVL3Q92997 716 aaPredicted RBP15.76■□□□□ 0.11
CLN3-254ENST00000637050 BBC3Q96PG8 261 aaPredicted RBP15.76■□□□□ 0.11
CLN3-254ENST00000637050 HIST1H2AAQ96QV6 131 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 ATG5Q9H1Y0 275 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 DIABLOQ9NR28 239 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 ING4Q9UNL4 249 aa15.76■□□□□ 0.11
CLN3-254ENST00000637050 MRPS7Q9Y2R9 242 aaKnown RBP15.76■□□□□ 0.11
CLN3-254ENST00000637050 PCNX1Q96RV3 2341 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 A0A0A6YYH2 397 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 A6NJ64 397 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 CTDSPLO15194 276 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 KDM4BO94953 1096 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 HLA-DQB1P01920 261 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 TMEM225BP0DP42 221 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 IL7P13232 177 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 ZNF250P15622 560 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 GPM6AP51674 278 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 SORDQ00796 357 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 PDZK1IP1Q13113 114 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 PXT1Q8NFP0 134 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 OR8G5Q8NG78 346 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 FAM46BQ96A09 425 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 S100A13Q99584 98 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 NGBQ9NPG2 151 aa15.75■□□□□ 0.11
CLN3-254ENST00000637050 ISPDA4D126 451 aa15.74■□□□□ 0.11
CLN3-254ENST00000637050 OR5B21A6NL26 309 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms