RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 IGHV3OR15-7A0A075B7D8 119 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 LOC107986453A0A1B0GWG9 222 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 TMEM210A6NLX4 147 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 E9PI62 339 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 LGALS8O00214 317 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 FSTL3O95633 263 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 WNT2P09544 360 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 LIMS3P0CW19 117 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 LIMS4P0CW20 117 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 HSPA13P48723 471 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 ETV1P50549 477 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 CHRFAM7AQ494W8 412 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 FAM76BQ5HYJ3 339 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 CLVS2Q5SYC1 327 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 TMEM42Q69YG0 159 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 SYS1Q8N2H4 156 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 SCCPDHQ8NBX0 429 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 FBLIM1Q8WUP2 373 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 GGHQ92820 318 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 ITFG2Q969R8 447 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 SEH1LQ96EE3 360 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 MRPL48Q96GC5 212 aaKnown RBP12.72□□□□□ -0.37
LIG1-219ENST00000600055 BEX2Q9BXY8 128 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 SHARPINQ9H0F6 387 aa12.72□□□□□ -0.37
LIG1-219ENST00000600055 NSD1Q96L73 2696 aaPredicted RBP12.71□□□□□ -0.37
LIG1-219ENST00000600055 TRAV20A0A0B4J274 112 aa12.71□□□□□ -0.37
LIG1-219ENST00000600055 OOEPA6NGQ2 149 aa12.71□□□□□ -0.37
LIG1-219ENST00000600055 PHF1O43189 567 aaPredicted RBP12.71□□□□□ -0.37
LIG1-219ENST00000600055 XPNPEP2O43895 674 aa12.71□□□□□ -0.37
LIG1-219ENST00000600055 RHBDL1O75783 438 aa12.71□□□□□ -0.37
LIG1-219ENST00000600055 UBCP0CG48 685 aaKnown RBP12.71□□□□□ -0.37
LIG1-219ENST00000600055 RPS2P15880 293 aaKnown RBP12.71□□□□□ -0.37
LIG1-219ENST00000600055 DCKP27707 260 aa12.71□□□□□ -0.37
LIG1-219ENST00000600055 VHLP40337 213 aa12.71□□□□□ -0.37
LIG1-219ENST00000600055 GMFBP60983 142 aa12.71□□□□□ -0.37
LIG1-219ENST00000600055 GNG3P63215 75 aa12.71□□□□□ -0.37
LIG1-219ENST00000600055 ALKBH1Q13686 389 aaKnown RBP12.71□□□□□ -0.37
LIG1-219ENST00000600055 OR5A2Q8NGI9 324 aa12.71□□□□□ -0.37
LIG1-219ENST00000600055 OR10AC1Q8NH08 325 aa12.71□□□□□ -0.37
LIG1-219ENST00000600055 JAM3Q9BX67 310 aa12.71□□□□□ -0.37
LIG1-219ENST00000600055 OR51I2Q9H344 312 aa12.71□□□□□ -0.37
LIG1-219ENST00000600055 MIOXQ9UGB7 285 aa12.71□□□□□ -0.37
LIG1-219ENST00000600055 CDC42EP3Q9UKI2 254 aa12.71□□□□□ -0.37
LIG1-219ENST00000600055 NIPBLQ6KC79 2804 aaeCLIP12.7□□□□□ -0.38
LIG1-219ENST00000600055 OR4C45A6NMZ5 311 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 DHRS7CA6NNS2 312 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 KIAA1324LA8MWY0 1029 aaPredicted RBP12.7□□□□□ -0.38
LIG1-219ENST00000600055 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.7□□□□□ -0.38
LIG1-219ENST00000600055 TNFRSF13BO14836 293 aaPredicted RBP12.7□□□□□ -0.38
LIG1-219ENST00000600055 AKR7A2O43488 359 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 GYPAP02724 150 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 CCR9P51686 369 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 GTF2A1P52655 376 aaPredicted RBP12.7□□□□□ -0.38
LIG1-219ENST00000600055 ESCO2Q56NI9 601 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 OR2G6Q5TZ20 316 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 TMEM244Q5VVB8 128 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 TEX36Q5VZQ5 186 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 FAHD2BQ6P2I3 314 aaPredicted RBP12.7□□□□□ -0.38
LIG1-219ENST00000600055 DCDC5Q6ZRR9 648 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 PRIMA1Q86XR5 153 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 FAM90A1Q86YD7 464 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 OR51A4Q8NGJ6 313 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 NEIL1Q96FI4 390 aaPredicted RBP12.7□□□□□ -0.38
LIG1-219ENST00000600055 FAHD2AQ96GK7 314 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 MYCBPQ99417 103 aaPredicted RBP12.7□□□□□ -0.38
LIG1-219ENST00000600055 WDR13Q9H1Z4 485 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 PLEKHA1Q9HB21 404 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 MMP26Q9NRE1 261 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 ERVK-18Q9QC07 812 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 CTSZQ9UBR2 303 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 CLEC2DQ9UHP7 191 aa12.7□□□□□ -0.38
LIG1-219ENST00000600055 DIMT1Q9UNQ2 313 aaKnown RBP12.7□□□□□ -0.38
LIG1-219ENST00000600055 SETD2Q9BYW2 2564 aaPredicted RBP12.7□□□□□ -0.38
LIG1-219ENST00000600055 TRAV38-1A0A0B4J264 116 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 ANKRD61A6NGH8 418 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 OR5B21A6NL26 309 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 TRAPPC2LH3BP13 241 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 FOXH1O75593 365 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 AVPP01185 164 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 ISG15P05161 165 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 CFHR2P36980 270 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 GBX2P52951 348 aaPredicted RBP12.69□□□□□ -0.38
LIG1-219ENST00000600055 UBE2V2Q15819 145 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 XAF1Q6GPH4 301 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 HAGHLQ6PII5 290 aaPredicted RBP12.69□□□□□ -0.38
LIG1-219ENST00000600055 ZNF841Q6ZN19 808 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 BPIFB6Q8NFQ5 453 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 OR8B3Q8NGG8 313 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 TRMT10AQ8TBZ6 339 aaKnown RBP12.69□□□□□ -0.38
LIG1-219ENST00000600055 NPRL2Q8WTW4 380 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 ADAT3Q96EY9 351 aaPredicted RBP12.69□□□□□ -0.38
LIG1-219ENST00000600055 TMEM80Q96HE8 168 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 OR8B2Q96RD0 313 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 SSBP3Q9BWW4 388 aaPredicted RBP12.69□□□□□ -0.38
LIG1-219ENST00000600055 LPAR3Q9UBY5 353 aa12.69□□□□□ -0.38
LIG1-219ENST00000600055 SONP18583 2426 aaKnown RBP12.69□□□□□ -0.38
LIG1-219ENST00000600055 PQLC2LA1A4F0 135 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 IRGMA1A4Y4 181 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 A8MXK9 166 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 SRRM5B3KS81 715 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms