RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 MUC1P15941 1255 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-213ENST00000598355 GNG3P63215 75 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 RAB40BQ12829 278 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 TP53I3Q53FA7 332 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 ZNF691Q5VV52 312 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 LPCAT4Q643R3 524 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 WDR25Q64LD2 544 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-213ENST00000598355 FAHD2BQ6P2I3 314 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-213ENST00000598355 FAM220AQ7Z4H9 259 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 KCTD20Q7Z5Y7 419 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 SCCPDHQ8NBX0 429 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 CCDC54Q8NEL0 328 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 OR5A2Q8NGI9 324 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 C12orf43Q96C57 262 aaKnown RBP13.44□□□□□ -0.26
TRIM28-213ENST00000598355 FAHD2AQ96GK7 314 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 RNF170Q96K19 258 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 Q96MT0 163 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 JAM3Q9BX67 310 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 OR51I2Q9H344 312 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 GTF2A1LQ9UNN4 478 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 PIGLQ9Y2B2 252 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 LOC105371242A0A075B767 164 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 IGHV2-70DA0A0C4DH43 119 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 C3orf80F5H4A9 247 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 P2RY10O00398 339 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 CDIPTO14735 213 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 UBCP0CG48 685 aaKnown RBP13.43□□□□□ -0.26
TRIM28-213ENST00000598355 NPY4RP50391 375 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 ACTA2P62736 377 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 GNB2P62879 340 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 ACTG2P63267 376 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 ADARB1P78563 741 aaKnown RBP13.43□□□□□ -0.26
TRIM28-213ENST00000598355 PAX8Q06710 450 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 GALEQ14376 348 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 LRRC36Q1X8D7 754 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 CLVS2Q5SYC1 327 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 SFRP4Q6FHJ7 346 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-213ENST00000598355 SYS1Q8N2H4 156 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 OR2G2Q8NGZ5 317 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 RPL3LQ92901 407 aaKnown RBP13.43□□□□□ -0.26
TRIM28-213ENST00000598355 PELI1Q96FA3 418 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 SMURF1Q9HCE7 757 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 INPP5EQ9NRR6 644 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 OR5V1Q9UGF6 321 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 GNG8Q9UK08 70 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 MYRFQ9Y2G1 1151 aa13.43□□□□□ -0.26
TRIM28-213ENST00000598355 LOC107986453A0A1B0GWG9 222 aa13.42□□□□□ -0.26
TRIM28-213ENST00000598355 DAPL1A0PJW8 107 aa13.42□□□□□ -0.26
TRIM28-213ENST00000598355 NRASP01111 189 aa13.42□□□□□ -0.26
TRIM28-213ENST00000598355 PPIAL4GP0DN37 164 aa13.42□□□□□ -0.26
TRIM28-213ENST00000598355 SRP14P37108 136 aaKnown RBP13.42□□□□□ -0.26
TRIM28-213ENST00000598355 GPM6AP51674 278 aa13.42□□□□□ -0.26
TRIM28-213ENST00000598355 OR12D2P58182 307 aa13.42□□□□□ -0.26
TRIM28-213ENST00000598355 C11orf91Q3C1V1 193 aa13.42□□□□□ -0.26
TRIM28-213ENST00000598355 CEP78Q5JTW2 689 aa13.42□□□□□ -0.26
TRIM28-213ENST00000598355 STUMQ69YW2 141 aa13.42□□□□□ -0.26
TRIM28-213ENST00000598355 THAP5Q7Z6K1 395 aa13.42□□□□□ -0.26
TRIM28-213ENST00000598355 ZNF555Q8NEP9 628 aa13.42□□□□□ -0.26
TRIM28-213ENST00000598355 C10orf35Q96D05 121 aa13.42□□□□□ -0.26
TRIM28-213ENST00000598355 C7orf69Q9H7B7 122 aa13.42□□□□□ -0.26
TRIM28-213ENST00000598355 CLN8Q9UBY8 286 aa13.42□□□□□ -0.26
TRIM28-213ENST00000598355 DSCAML1Q8TD84 2053 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 PQLC2LA1A4F0 135 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 ZNF732B4DXR9 585 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 C22orf46C9J442 243 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 CLIC3O95833 236 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 FADS2O95864 444 aaKnown RBP13.41□□□□□ -0.26
TRIM28-213ENST00000598355 ISG15P05161 165 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 AMY2BP19961 511 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 CCR9P51686 369 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 NANOS3P60323 173 aaKnown RBP13.41□□□□□ -0.26
TRIM28-213ENST00000598355 SMN1Q16637 294 aaKnown RBP13.41□□□□□ -0.26
TRIM28-213ENST00000598355 ATPAF1Q5TC12 328 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-213ENST00000598355 TTC23Q5W5X9 447 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 PLCXD3Q63HM9 321 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 BOLLQ8N9W6 283 aaKnown RBP13.41□□□□□ -0.26
TRIM28-213ENST00000598355 OR52I1Q8NGK6 324 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 RAB40AQ8WXH6 277 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 AQP3Q92482 292 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 C4orf36Q96KX1 117 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 HIST1H2AAQ96QV6 131 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 MDFIQ99750 246 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 ALG8Q9BVK2 526 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 CHST5Q9GZS9 411 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 DNTTIP1Q9H147 329 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 DCLRE1BQ9H816 532 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 AMBNQ9NP70 447 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 FGF20Q9NP95 211 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-213ENST00000598355 ERVK13-1Q9NX77 482 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 FRRS1LQ9P0K9 344 aa13.41□□□□□ -0.26
TRIM28-213ENST00000598355 RPL36Q9Y3U8 105 aaKnown RBP13.41□□□□□ -0.26
TRIM28-213ENST00000598355 A0A1B0GVI7 797 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 ADAM20O43506 726 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 SYT7O43581 403 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 RHBDL1O75783 438 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 GYPAP02724 150 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 MPZP25189 248 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 ELF3P78545 371 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-213ENST00000598355 IL18R1Q13478 541 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 MICBQ29980 383 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms