RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 FBLN5Q9UBX5 448 aa10.27□□□□□ -0.77
TRIM28-212ENST00000597995 M0R129 80 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 NPFFO15130 113 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 NDUFB3O43676 98 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 ACKR3P25106 362 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 TGM4P49221 684 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 SNAPC1Q16533 368 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 TIGD6Q17RP2 521 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 C1orf122Q6ZSJ8 110 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 AMIGO2Q86SJ2 522 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 ZNF454Q8N9F8 522 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 OR1M1Q8NGA1 313 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 OR52H1Q8NGJ2 320 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 C8orf46Q8TAG6 207 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 LRRC29Q8WV35 223 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 DUS3LQ96G46 650 aaKnown RBP10.26□□□□□ -0.77
TRIM28-212ENST00000597995 PGAM5Q96HS1 289 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 TEAD3Q99594 435 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 OR10A2Q9H208 303 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 COPS3Q9UNS2 423 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 RHBDD3Q9Y3P4 386 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 LRP12Q9Y561 859 aa10.26□□□□□ -0.77
TRIM28-212ENST00000597995 TET2Q6N021 2002 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-212ENST00000597995 A0A1B0GW55 424 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 RNASEK-C17orf49H0YIS7 233 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-212ENST00000597995 PSMD9O00233 223 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 APOC1P02654 83 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 MRPL3P09001 348 aaKnown RBP10.25□□□□□ -0.77
TRIM28-212ENST00000597995 DUX4L2P0CJ85 424 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 DUX4L3P0CJ86 424 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 DUX4L4P0CJ87 422 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 DUX4L5P0CJ88 424 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 DUX4L6P0CJ89 424 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 DUX4L7P0CJ90 424 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 PSMA6P60900 246 aaKnown RBP10.25□□□□□ -0.77
TRIM28-212ENST00000597995 RPS7P62081 194 aaKnown RBP10.25□□□□□ -0.77
TRIM28-212ENST00000597995 CSNK2BP67870 215 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 ELF3P78545 371 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-212ENST00000597995 EGR3Q06889 387 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 HERPUD1Q15011 391 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 GFOD2Q3B7J2 385 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 LRRC10Q5BKY1 277 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 SLX4IPQ5VYV7 408 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 KDM4DQ6B0I6 523 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 SLC35E4Q6ICL7 350 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 C11orf88Q6PI97 169 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 DUX4L9Q6RFH8 374 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-212ENST00000597995 WDR82Q6UXN9 313 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 FGFRL1Q8N441 504 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 Q8N7P7 452 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 OR8B12Q8NGG6 310 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 DNAJC9Q8WXX5 260 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 DCTN5Q9BTE1 182 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 YIPF3Q9GZM5 350 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 DNTTIP1Q9H147 329 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 SEMA6AQ9H2E6 1030 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 SP140LQ9H930 580 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 SIRT7Q9NRC8 400 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 DUX4Q9UBX2 424 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 AP4S1Q9Y587 144 aa10.25□□□□□ -0.77
TRIM28-212ENST00000597995 ANKRD61A6NGH8 418 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 ZAR1LA6NP61 321 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 G3V2T6 193 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 PAHP00439 452 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 OPN1MWP04001 364 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 OPN1MW2P0DN77 364 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 OPN1MW3P0DN78 364 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 AMY2BP19961 511 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 CFL1P23528 166 aaKnown RBP10.24□□□□□ -0.77
TRIM28-212ENST00000597995 GABRA5P31644 462 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 POLR2IP36954 125 aaKnown RBP10.24□□□□□ -0.77
TRIM28-212ENST00000597995 UBE2E1P51965 193 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 ESRRGP62508 458 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 ACSM1Q08AH1 577 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 BEAN1Q3B7T3 259 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 KPRPQ5T749 579 aaPredicted RBP10.24□□□□□ -0.77
TRIM28-212ENST00000597995 AADACL4Q5VUY2 407 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 C1orf146Q5VVC0 180 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 NCR3LG1Q68D85 454 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 C12orf73Q69YU5 71 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 Q6ZTK2 550 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.24□□□□□ -0.77
TRIM28-212ENST00000597995 FAM216BQ8N7L0 139 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 TNFRSF14Q92956 283 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 PPP1R14AQ96A00 147 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 ITPKCQ96DU7 683 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 SEH1LQ96EE3 360 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 GABARAPL1Q9H0R8 117 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 TLNRD1Q9H1K6 362 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 KRT84Q9NSB2 600 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 FAM206AQ9NX38 181 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 LAMP5Q9UJQ1 280 aa10.24□□□□□ -0.77
TRIM28-212ENST00000597995 ZNF850A8MQ14 1090 aa10.23□□□□□ -0.77
TRIM28-212ENST00000597995 M0R1W7 72 aa10.23□□□□□ -0.77
TRIM28-212ENST00000597995 ATP5HO75947 161 aa10.23□□□□□ -0.77
TRIM28-212ENST00000597995 FASP25445 335 aa10.23□□□□□ -0.77
TRIM28-212ENST00000597995 SAA4P35542 130 aa10.23□□□□□ -0.77
TRIM28-212ENST00000597995 KIR2DS4P43632 304 aa10.23□□□□□ -0.77
TRIM28-212ENST00000597995 RASSF2P50749 326 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms