RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 CPT2P23786 658 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 MPGP29372 298 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 MLF1P58340 268 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 LY6G6FQ5SQ64 297 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 SFRP5Q5T4F7 317 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 DCAF12Q5T6F0 453 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 FAM27BQ5VT28 67 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 RGS7BPQ6MZT1 257 aaPredicted RBP6.5□□□□□ -1.37
ZNF540-206ENST00000589117 IGF2-ASQ6U949 168 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 KCTD9Q7L273 389 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 HOGA1Q86XE5 327 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 OR5AS1Q8N127 324 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 ARMC10Q8N2F6 343 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 OR14K1Q8NGZ2 314 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 PPP1R1CQ8WVI7 109 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 ZNF799Q96GE5 643 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 DNTTIP1Q9H147 329 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 PPA2Q9H2U2 334 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 PRO3102Q9H379 93 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 AKIRIN1Q9H9L7 192 aaPredicted RBP6.5□□□□□ -1.37
ZNF540-206ENST00000589117 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.5□□□□□ -1.37
ZNF540-206ENST00000589117 PCDHB16Q9NRJ7 776 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 ZNF391Q9UJN7 358 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 PADI1Q9ULC6 663 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 HS3ST3B1Q9Y662 390 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 EXPH5Q8NEV8 1989 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 SDK1Q7Z5N4 2213 aa6.5□□□□□ -1.37
ZNF540-206ENST00000589117 B4E171 279 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 ZIC3O60481 467 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 CA11O75493 328 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 PET100P0DJ07 73 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 CCL3P10147 92 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 PSMB6P28072 239 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 SRD5A2P31213 254 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 TSPAN7P41732 249 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 OR3A4PP47883 348 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 SUCLG1P53597 346 aaKnown RBP6.49□□□□□ -1.37
ZNF540-206ENST00000589117 CARD18P57730 90 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 PCBD1P61457 104 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 MRPS34P82930 218 aaKnown RBP6.49□□□□□ -1.37
ZNF540-206ENST00000589117 HYAL4Q2M3T9 481 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 ZNF528Q3MIS6 628 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 CT83Q5H943 113 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 ZNF660Q6AZW8 331 aaPredicted RBP6.49□□□□□ -1.37
ZNF540-206ENST00000589117 DRAM2Q6UX65 266 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 FOXL2NBQ6ZUU3 175 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 HSD17B13Q7Z5P4 300 aaPredicted RBP6.49□□□□□ -1.37
ZNF540-206ENST00000589117 PEG10Q86TG7 708 aaKnown RBP6.49□□□□□ -1.37
ZNF540-206ENST00000589117 LRRC18Q8N456 261 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 FAM89BQ8N5H3 189 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 TMEM185AQ8NFB2 350 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 CASTOR1Q8WTX7 329 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 SEC22AQ96IW7 307 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 SPACA5Q96QH8 159 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 ZPBPQ9BS86 351 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 NMES1Q9C002 83 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 BANF2Q9H503 90 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 ELL3Q9HB65 397 aaPredicted RBP6.49□□□□□ -1.37
ZNF540-206ENST00000589117 FBXO4Q9UKT5 387 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 TNFSF18Q9UNG2 199 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 CACNA1EQ15878 2313 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 ADAMTS9Q9P2N4 1935 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 ASCC3Q8N3C0 2202 aaKnown RBP6.49□□□□□ -1.37
ZNF540-206ENST00000589117 A0A0B4J2A0 478 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 C13orf42A0A1B0GVH6 325 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 MFSD2BA6NFX1 497 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 OR2AT4A6NND4 320 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 SOCS1O15524 211 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 BCL2L11O43521 198 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 RAMP1O60894 148 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 CSTBP04080 98 aaKnown RBP6.49□□□□□ -1.37
ZNF540-206ENST00000589117 FAM87AP0C7U9 286 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 FCGR2AP12318 317 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 PRKACBP22694 351 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 BLVRBP30043 206 aaPredicted RBP6.49□□□□□ -1.37
ZNF540-206ENST00000589117 DLSTP36957 453 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 HIST1H3AP68431 136 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 SCRN3Q0VDG4 424 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 SURF2Q15527 256 aaPredicted RBP6.49□□□□□ -1.37
ZNF540-206ENST00000589117 CHRFAM7AQ494W8 412 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 LRRC37A5PQ49AS3 106 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 PDSS1Q5T2R2 415 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 HIST2H3PS2Q5TEC6 136 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 HIST2H3AQ71DI3 136 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 GALNTL5Q7Z4T8 443 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 C20orf196Q8IYI0 205 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 TMEM123Q8N131 208 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 EIF4E3Q8N5X7 224 aaKnown RBP6.49□□□□□ -1.37
ZNF540-206ENST00000589117 ZNF610Q8N9Z0 462 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 TMEM104Q8NE00 496 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 PXT1Q8NFP0 134 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 SEMA6DQ8NFY4 1073 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 OR14L1PQ8NHC6 308 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 MARCH1Q8TCQ1 289 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 PCNPQ8WW12 178 aaKnown RBP6.49□□□□□ -1.37
ZNF540-206ENST00000589117 ST8SIA2Q92186 375 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 HAS2Q92819 552 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 SPSB1Q96BD6 273 aa6.49□□□□□ -1.37
ZNF540-206ENST00000589117 VRK1Q99986 396 aaPredicted RBP6.49□□□□□ -1.37
ZNF540-206ENST00000589117 ZNF471Q9BX82 626 aaPredicted RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms