RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 VAMP3Q15836 100 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 MRPL23Q16540 153 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 CDKN3Q16667 212 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 ZNF699Q32M78 642 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 SMIM21Q3B7S5 101 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 CDNFQ49AH0 187 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 NCMAPQ5T1S8 102 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 N4BP2L1Q5TBK1 243 aaPredicted RBP2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 C9orf135Q5VTT2 229 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 OR4F3Q6IEY1 312 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 HAGHLQ6PII5 290 aaPredicted RBP2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 DNM1P34Q6PK57 102 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 PLET1Q6UQ28 207 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 UQCC3Q6UW78 93 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 APTXQ7Z2E3 356 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 TMEM25Q86YD3 366 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 SNX29P2Q8IUI4 249 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 ZBTB8OSQ8IWT0 167 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 CTAGE3PQ8IX95 158 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 RIMKLAQ8IXN7 391 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 CMTM8Q8IZV2 173 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 GABRG1Q8N1C3 465 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 SYS1Q8N2H4 156 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 C12orf45Q8N5I9 185 aaPredicted RBP2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 ZSCAN4Q8NAM6 433 aaPredicted RBP2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 ST6GALNAC3Q8NDV1 305 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 TMEM161BQ8NDZ6 487 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 FAM71CQ8NEG0 241 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 SDR9C7Q8NEX9 313 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 B3GNT7Q8NFL0 401 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 OR4F17Q8NGA8 305 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 OR2AP1Q8NGE2 309 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 OR6K3Q8NGY3 331 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 OR4S2Q8NH73 311 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 DEDD2Q8WXF8 326 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 ASB17Q8WXJ9 295 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 FCGR1BQ92637 280 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 GHSRQ92847 366 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 RBPMSQ93062 196 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 TMEM203Q969S6 136 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 FGGYQ96C11 551 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 RAB39BQ96DA2 213 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 SFRP2Q96HF1 295 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 NARS2Q96I59 477 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 TMEM101Q96IK0 257 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 ZNF75AQ96N20 296 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 OR4F4Q96R69 305 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 RBBP8Q99708 897 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 AIF1LQ9BQI0 150 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 VPS25Q9BRG1 176 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 ZNF426Q9BUY5 554 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 FICDQ9BVA6 458 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 REG4Q9BYZ8 158 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 DCSTAMPQ9H295 470 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 ARV1Q9H2C2 271 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 BOLA2Q9H3K6 86 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 RHOFQ9HBH0 211 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 EML4Q9HC35 981 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 HMG20AQ9NP66 347 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 MEPEQ9NQ76 525 aaPredicted RBP2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 SLC2A8Q9NY64 477 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 IFNKQ9P0W0 207 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 RNF14Q9UBS8 474 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 PITPNC1Q9UKF7 332 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 SNX12Q9UMY4 172 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 SSR3Q9UNL2 185 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 ING4Q9UNL4 249 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 FLVCR2Q9UPI3 526 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 B9D1Q9UPM9 204 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 ARL5AQ9Y689 179 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 TOP2AP11388 1531 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 HFM1A2PYH4 1435 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 PTPRTO14522 1441 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 SETD5Q9C0A6 1442 aa2.5□□□□□ -2.01
SMCHD1-202ENST00000577300 PSME4Q14997 1843 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 PCM1Q15154 2024 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 A0A1B0GUS0 222 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 DHRS7CA6NNS2 312 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 C9JVG2 144 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 H0Y980 276 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 DFFAO00273 331 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 COPEO14579 308 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 PPP1R2P9O14990 202 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 ARPC1BO15143 372 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 UBDO15205 165 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 SLC16A4O15374 487 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 TIMM8AO60220 97 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 SOX15O60248 233 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 MRPS14O60783 128 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 ATG12O94817 140 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 KCNK2O95069 426 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 C2P06681 752 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 C8GP07360 202 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 CA3P07451 260 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 TRAPPC2P0DI81 140 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 TRAPPC2BP0DI82 140 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 C1GALT1C1LP0DN25 315 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 RRASP10301 218 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 FOLR1P15328 257 aa2.49□□□□□ -2.01
SMCHD1-202ENST00000577300 HIST1H1BP16401 226 aaKnown RBP2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms