RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 OR2F2O95006 317 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 NDUFB2O95178 105 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 TXNDC12O95881 172 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 RBP4P02753 201 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 IGHV1-8P0DP01 117 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 GLRA1P23415 457 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 NOS3P29474 1203 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 GPR4P46093 362 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 OR3A4PP47883 348 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 SLC7A2P52569 658 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 FAM3AP98173 230 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 DYNC1I2Q13409 638 aaKnown RBP14.27□□□□□ -0.13
CLK3-227ENST00000570296 ZNF273Q14593 569 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 SLC16A9Q7RTY1 509 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 DPP10Q8N608 796 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 LZICQ8WZA0 190 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 SLC25A33Q9BSK2 321 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 PAPOLGQ9BWT3 736 aaKnown RBP14.27□□□□□ -0.13
CLK3-227ENST00000570296 KCNG2Q9UJ96 466 aa14.27□□□□□ -0.13
CLK3-227ENST00000570296 AMY1AP04745 511 aa14.26□□□□□ -0.13
CLK3-227ENST00000570296 AMY2AP04746 511 aa14.26□□□□□ -0.13
CLK3-227ENST00000570296 SNRNP70P08621 437 aaKnown RBP14.26□□□□□ -0.13
CLK3-227ENST00000570296 DLX6P56179 175 aa14.26□□□□□ -0.13
CLK3-227ENST00000570296 IL18R1Q13478 541 aa14.26□□□□□ -0.13
CLK3-227ENST00000570296 TRAM2Q15035 370 aa14.26□□□□□ -0.13
CLK3-227ENST00000570296 FAM76BQ5HYJ3 339 aa14.26□□□□□ -0.13
CLK3-227ENST00000570296 LCN8Q6JVE9 175 aa14.26□□□□□ -0.13
CLK3-227ENST00000570296 DHDDSQ86SQ9 333 aa14.26□□□□□ -0.13
CLK3-227ENST00000570296 OFCC1Q8IZS5 231 aa14.26□□□□□ -0.13
CLK3-227ENST00000570296 OR4C15Q8NGM1 316 aa14.26□□□□□ -0.13
CLK3-227ENST00000570296 RBM14Q96PK6 669 aaKnown RBP14.26□□□□□ -0.13
CLK3-227ENST00000570296 CGREF1Q99674 301 aa14.26□□□□□ -0.13
CLK3-227ENST00000570296 PPP1R3EQ9H7J1 279 aa14.26□□□□□ -0.13
CLK3-227ENST00000570296 IER3IP1Q9Y5U9 82 aa14.26□□□□□ -0.13
CLK3-227ENST00000570296 DSCAML1Q8TD84 2053 aa14.26□□□□□ -0.13
CLK3-227ENST00000570296 SH2D7A6NKC9 451 aaPredicted RBP14.25□□□□□ -0.13
CLK3-227ENST00000570296 M0QZK8 103 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 TROVE2P10155 538 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLK3-227ENST00000570296 SNCBQ16143 134 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 C9orf152Q5JTZ5 239 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 ZNF730Q6ZMV8 503 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 MBOAT2Q6ZWT7 520 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 THAP5Q7Z6K1 395 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 EGFL6Q8IUX8 553 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 FTMTQ8N4E7 242 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 COMMD1Q8N668 190 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 CSNK2A3Q8NEV1 391 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 OR4M1Q8NGD0 313 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 OR2T27Q8NH04 317 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 OR8U1Q8NH10 309 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 OR10A6Q8NH74 314 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 BCAS4Q8TDM0 211 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 CHPT1Q8WUD6 406 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 PAIP2Q9BPZ3 127 aaKnown RBP14.25□□□□□ -0.13
CLK3-227ENST00000570296 YY1AP1Q9H869 796 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 SRA1Q9HD15 236 aaKnown RBP14.25□□□□□ -0.13
CLK3-227ENST00000570296 ABCB9Q9NP78 766 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 RHBDD3Q9Y3P4 386 aa14.25□□□□□ -0.13
CLK3-227ENST00000570296 SLC2A1P11166 492 aa14.24□□□□□ -0.13
CLK3-227ENST00000570296 MYF6P23409 242 aa14.24□□□□□ -0.13
CLK3-227ENST00000570296 DCTDP32321 178 aa14.24□□□□□ -0.13
CLK3-227ENST00000570296 RPS6KA3P51812 740 aa14.24□□□□□ -0.13
CLK3-227ENST00000570296 ZNF260Q3ZCT1 412 aa14.24□□□□□ -0.13
CLK3-227ENST00000570296 DPY19L2P2Q6ZN68 376 aa14.24□□□□□ -0.13
CLK3-227ENST00000570296 ZNF561Q8N587 486 aa14.24□□□□□ -0.13
CLK3-227ENST00000570296 OR4Q3Q8NH05 313 aa14.24□□□□□ -0.13
CLK3-227ENST00000570296 NDNFQ8TB73 568 aa14.24□□□□□ -0.13
CLK3-227ENST00000570296 FNDC11Q9BVV2 318 aa14.24□□□□□ -0.13
CLK3-227ENST00000570296 C1orf21Q9H246 121 aa14.24□□□□□ -0.13
CLK3-227ENST00000570296 MPC1Q9Y5U8 109 aa14.24□□□□□ -0.13
CLK3-227ENST00000570296 A0A087WUU8 490 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 hCG_38984A0A1B0GV85 526 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 SLC1A7O00341 560 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 LDLRAD4O15165 306 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 MTRF1O75570 445 aaKnown RBP14.23□□□□□ -0.13
CLK3-227ENST00000570296 IFNA14P01570 189 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 HLA-DQA2P01906 255 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 BRS3P32247 399 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 GZMMP51124 257 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 INSL3P51460 131 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 PRKXP51817 358 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 TIGD6Q17RP2 521 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 CROCCP2Q86T23 111 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 ZBTB46Q86UZ6 589 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 OR5P3Q8WZ94 311 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 COPS4Q9BT78 406 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 TBC1D23Q9NUY8 699 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 SIGLEC7Q9Y286 467 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 TMEM5Q9Y2B1 443 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 N6AMT1Q9Y5N5 214 aa14.23□□□□□ -0.13
CLK3-227ENST00000570296 DNAH10Q8IVF4 4471 aa14.22□□□□□ -0.13
CLK3-227ENST00000570296 HCKP08631 526 aa14.22□□□□□ -0.13
CLK3-227ENST00000570296 CFL1P23528 166 aaKnown RBP14.22□□□□□ -0.13
CLK3-227ENST00000570296 CD24P25063 80 aa14.22□□□□□ -0.13
CLK3-227ENST00000570296 SLC18A1P54219 525 aa14.22□□□□□ -0.13
CLK3-227ENST00000570296 AGKQ53H12 422 aa14.22□□□□□ -0.13
CLK3-227ENST00000570296 EPGNQ6UW88 154 aa14.22□□□□□ -0.13
CLK3-227ENST00000570296 ZDHHC21Q8IVQ6 265 aa14.22□□□□□ -0.13
CLK3-227ENST00000570296 STMN2Q93045 179 aa14.22□□□□□ -0.13
CLK3-227ENST00000570296 REEP6Q96HR9 211 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms