RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 CSNK2A3Q8NEV1 391 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 BPIFB6Q8NFQ5 453 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 SEMA6DQ8NFY4 1073 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 OR13C5Q8NGS8 318 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 DACT3Q96B18 629 aaPredicted RBP7.7□□□□□ -1.18
VPS35-206ENST00000565228 RNF170Q96K19 258 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 ZNF488Q96MN9 340 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 Q96MT0 163 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 NKX3-1Q99801 234 aaPredicted RBP7.7□□□□□ -1.18
VPS35-206ENST00000565228 ANKRD60Q9BZ19 345 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 OPA3Q9H6K4 179 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 MOB1AQ9H8S9 216 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 SP140LQ9H930 580 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 MMP26Q9NRE1 261 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 YAE1D1Q9NRH1 226 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 ERVK-18Q9QC07 812 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 HSPE1-MOB4S4R3N1 261 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 JMJD1CQ15652 2540 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 MXRA5Q9NR99 2828 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 PQLC2LA1A4F0 135 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 ANKRD61A6NGH8 418 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 ANKRD30BLA7E2S9 258 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 ZNF732B4DXR9 585 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 FADS2O95864 444 aaKnown RBP7.69□□□□□ -1.18
VPS35-206ENST00000565228 WNT2P09544 360 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 SELLP14151 372 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 TNFSF4P23510 183 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 MAP2K3P46734 347 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 GPM6AP51674 278 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 ACTC1P68032 377 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 ACTA1P68133 377 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 RIPPLY1Q0D2K3 151 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 IRF3Q14653 427 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 CEACAM21Q3KPI0 293 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 ZNF404Q494X3 552 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 CYB5R2Q6BCY4 276 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 DOK3Q7L591 496 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 COMMD2Q86X83 199 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 ANGPTL5Q86XS5 388 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 FAM90A1Q86YD7 464 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 ZDHHC23Q8IYP9 409 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 BOLLQ8N9W6 283 aaKnown RBP7.69□□□□□ -1.18
VPS35-206ENST00000565228 DEFB108BQ8NET1 73 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 GATAD2BQ8WXI9 593 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 HPS1Q92902 700 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 ZDHHC16Q969W1 377 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 TMEM80Q96HE8 168 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 CYYR1Q96J86 154 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 PGLYRP3Q96LB9 341 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 OR5M11Q96RB7 305 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 RASSF4Q9H2L5 321 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 PATZ1Q9HBE1 687 aaKnown RBP7.69□□□□□ -1.18
VPS35-206ENST00000565228 SMURF1Q9HCE7 757 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 LSM2Q9Y333 95 aaKnown RBP7.69□□□□□ -1.18
VPS35-206ENST00000565228 MPC1Q9Y5U8 109 aa7.69□□□□□ -1.18
VPS35-206ENST00000565228 ISPDA4D126 451 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 SRRM5B3KS81 715 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 OGG1O15527 345 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 PHF1O43189 567 aaPredicted RBP7.68□□□□□ -1.18
VPS35-206ENST00000565228 AKR7A2O43488 359 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 SYT7O43581 403 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 NRASP01111 189 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 TGFAP01135 160 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 GYPAP02724 150 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 ISG15P05161 165 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 CDK1P06493 297 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 PIPP12273 146 aaPredicted RBP7.68□□□□□ -1.18
VPS35-206ENST00000565228 CFL1P23528 166 aaKnown RBP7.68□□□□□ -1.18
VPS35-206ENST00000565228 DCKP27707 260 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 CCR9P51686 369 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 GP2P55259 537 aaKnown RBP7.68□□□□□ -1.18
VPS35-206ENST00000565228 GMFBP60983 142 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 SLC35A2P78381 396 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 INSL4Q14641 139 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 CDK5R1Q15078 307 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 TMEM155Q4W5P6 130 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 KLHL22Q53GT1 634 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 TEX36Q5VZQ5 186 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 ZNF540Q8NDQ6 660 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 SETD9Q8NE22 299 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 OR5T2Q8NGG2 359 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 OR8S1Q8NH09 359 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 TRMT10AQ8TBZ6 339 aaKnown RBP7.68□□□□□ -1.18
VPS35-206ENST00000565228 NPRL2Q8WTW4 380 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 LRRC29Q8WV35 223 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 AQP3Q92482 292 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 RAB1CQ92928 201 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 FGGYQ96C11 551 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 CHST5Q9GZS9 411 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 SLC22A4Q9H015 551 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 DUSP21Q9H596 190 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 INPP5EQ9NRR6 644 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 SNTG1Q9NSN8 517 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 CNOT2Q9NZN8 540 aaKnown RBP7.68□□□□□ -1.18
VPS35-206ENST00000565228 RNF7Q9UBF6 113 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 OPN4Q9UHM6 478 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 ENPP5Q9UJA9 477 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 ZNF391Q9UJN7 358 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 PCDHGB1Q9Y5G3 927 aa7.68□□□□□ -1.18
VPS35-206ENST00000565228 PPIAL4EA0A075B759 164 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 161.1 ms