RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CSNK2A3Q8NEV1 391 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 OR2T12Q8NG77 320 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 OR4M1Q8NGD0 313 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 OR8J3Q8NGG0 315 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 OR2T27Q8NH04 317 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 CAPSLQ8WWF8 208 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 SPSB4Q96A44 273 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 MALSU1Q96EH3 234 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 REEP6Q96HR9 211 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 RNF170Q96K19 258 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 KCNJ15Q99712 375 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 IFT27Q9BW83 186 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 ANKRD19PQ9H560 264 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 YY1AP1Q9H869 796 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 KRCC1Q9NPI7 259 aaPredicted RBP5.87□□□□□ -1.47
VPS4A-203ENST00000564399 PLA2G2EQ9NZK7 142 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.87□□□□□ -1.47
VPS4A-203ENST00000564399 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.87□□□□□ -1.47
VPS4A-203ENST00000564399 RHBDD3Q9Y3P4 386 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 TBL2Q9Y4P3 447 aaKnown RBP5.87□□□□□ -1.47
VPS4A-203ENST00000564399 V9GYY5 206 aaPredicted RBP5.87□□□□□ -1.47
VPS4A-203ENST00000564399 OR6C68A6NDL8 312 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 TMEM210A6NLX4 147 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 ZNF850A8MQ14 1090 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 FAM220BPB1ANY3 271 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 H0YHG0 523 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 ARPC3O15145 178 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 RAMP3O60896 148 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 LPLP06858 475 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 H1F0P07305 194 aaKnown RBP5.86□□□□□ -1.47
VPS4A-203ENST00000564399 SPARCP09486 303 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 PSG2P11465 335 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 JUNBP17275 347 aaPredicted RBP5.86□□□□□ -1.47
VPS4A-203ENST00000564399 CFL1P23528 166 aaKnown RBP5.86□□□□□ -1.47
VPS4A-203ENST00000564399 AZGP1P25311 298 aaKnown RBP5.86□□□□□ -1.47
VPS4A-203ENST00000564399 SLC6A6P31641 620 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 SLC15A1P46059 708 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 OMPP47874 163 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 CX3CR1P49238 355 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 GSK3AP49840 483 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 SLC34A1Q06495 639 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 PRDX4Q13162 271 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 SNCBQ16143 134 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 SLC35F1Q5T1Q4 408 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 C10orf99Q6UWK7 81 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 FAM57BQ71RH2 274 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 C11orf42Q8N5U0 333 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 PROKR2Q8NFJ6 384 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 OR52H1Q8NGJ2 320 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 OR13D1Q8NGV5 346 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 FANK1Q8TC84 345 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 PIGCQ92535 297 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 SGK3Q96BR1 496 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 SLAMF6Q96DU3 332 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 AKR1E2Q96JD6 320 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 HIST1H2AAQ96QV6 131 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 PRR25Q96S07 402 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 C1orf21Q9H246 121 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 SP140LQ9H930 580 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 BRD7Q9NPI1 651 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 FAM32AQ9Y421 112 aaKnown RBP5.86□□□□□ -1.47
VPS4A-203ENST00000564399 LSM4Q9Y4Z0 139 aaKnown RBP5.86□□□□□ -1.47
VPS4A-203ENST00000564399 LRP12Q9Y561 859 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 HILPDAQ9Y5L2 63 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 MPC1Q9Y5U8 109 aa5.86□□□□□ -1.47
VPS4A-203ENST00000564399 TRBV4-1A0A0J9YWV2 114 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 hCG_38984A0A1B0GV85 526 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 A0A1W2PRQ8 180 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 NUDT19A8MXV4 375 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 ZNF878C9JN71 531 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 FXYD1O00168 92 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 SLC1A7O00341 560 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 MRASO14807 208 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 GSTA4O15217 222 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 PIPP12273 146 aaPredicted RBP5.85□□□□□ -1.47
VPS4A-203ENST00000564399 HSD11B1P28845 292 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 CEBPDP49716 269 aaPredicted RBP5.85□□□□□ -1.47
VPS4A-203ENST00000564399 THBS3P49746 956 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 DYNLT3P51808 116 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 RAB25P57735 213 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 GRB2P62993 217 aaKnown RBP5.85□□□□□ -1.47
VPS4A-203ENST00000564399 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.85□□□□□ -1.47
VPS4A-203ENST00000564399 DGCR6Q14129 220 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 ZNF273Q14593 569 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 ABCA11PQ4W5N1 156 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 C9orf152Q5JTZ5 239 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 LYPD4Q6UWN0 246 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 ETV3LQ6ZN32 361 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 THAP5Q7Z6K1 395 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 TIGD4Q8IY51 512 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 OR51L1Q8NGJ5 315 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 OR52J3Q8NH60 311 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 ZNF671Q8TAW3 534 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 NDNFQ8TB73 568 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 OR5P3Q8WZ94 311 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 SDSLQ96GA7 329 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 HSH2DQ96JZ2 352 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 LYZL4Q96KX0 146 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 PARD6BQ9BYG5 372 aa5.85□□□□□ -1.47
VPS4A-203ENST00000564399 OR10A2Q9H208 303 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms