RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 HDHD3Q9BSH5 251 aaPredicted RBP11.63□□□□□ -0.55
CLN3-210ENST00000563874 URM1Q9BTM9 101 aaKnown RBP11.63□□□□□ -0.55
CLN3-210ENST00000563874 UCK1Q9HA47 277 aa11.63□□□□□ -0.55
CLN3-210ENST00000563874 FGF21Q9NSA1 209 aa11.63□□□□□ -0.55
CLN3-210ENST00000563874 CEACAM18A8MTB9 384 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 NUDT19A8MXV4 375 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 HPNP05981 417 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 PGA4P0DJD7 388 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 PGA3P0DJD8 388 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 LYL1P12980 280 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 PTGFRP43088 359 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 KISS1Q15726 138 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 CHRFAM7AQ494W8 412 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 Q6ZRG5 221 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 DTX1Q86Y01 620 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 NOXO1Q8NFA2 376 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 STT3BQ8TCJ2 826 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 C14orf79Q96F83 325 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 ANAPC10Q9UM13 185 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 LSM5Q9Y4Y9 91 aaKnown RBP11.62□□□□□ -0.55
CLN3-210ENST00000563874 IGHV1OR21-1A0A087WYE8 117 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 IGHG1P01857 330 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 ZNF708P17019 499 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 PPT1P50897 306 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 ZNF41P51814 821 aaPredicted RBP11.62□□□□□ -0.55
CLN3-210ENST00000563874 SECTM1Q8WVN6 248 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 CLCC1Q96S66 551 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 PPP4R1LQ9P1A2 415 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 FBXL17Q9UF56 701 aa11.62□□□□□ -0.55
CLN3-210ENST00000563874 COLCA2A8K830 154 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 F5H5K5 113 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 EIF3GO75821 320 aaKnown RBP eCLIP11.61□□□□□ -0.55
CLN3-210ENST00000563874 IGLV3-19P01714 112 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 QDPRP09417 244 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 PET100P0DJ07 73 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 GLI4P10075 376 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 RPL12P30050 165 aaKnown RBP11.61□□□□□ -0.55
CLN3-210ENST00000563874 IL15RAQ13261 267 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 SWI5Q1ZZU3 235 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 FAM69BQ5VUD6 431 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 C6orf201Q7Z4U5 140 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 MISPQ8IVT2 679 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 SAT2Q96F10 170 aaPredicted RBP11.61□□□□□ -0.55
CLN3-210ENST00000563874 NCOA6Q14686 2063 aaPredicted RBP11.61□□□□□ -0.55
CLN3-210ENST00000563874 IGHV1OR15-9A0A0B4J2B8 117 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 TRBV11-1A0A0K0K1C0 115 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 K7EPK0 472 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 FCGR3AP08637 254 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 FAHP16930 419 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 FAM71E2Q8N5Q1 922 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 PIGTQ969N2 578 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 SCGB3A2Q96PL1 93 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 PNRC2Q9NPJ4 139 aaKnown RBP11.61□□□□□ -0.55
CLN3-210ENST00000563874 SLC2A4RGQ9NR83 387 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 KLHL13Q9P2N7 655 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 NPIPB13A6NJU9 1138 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 NPIPB4C9JG80 1138 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 CPT2P23786 658 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 GABRR1P24046 479 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 FCGR2CP31995 323 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 RBMXP38159 391 aaKnown RBP11.61□□□□□ -0.55
CLN3-210ENST00000563874 C17orf82Q86X59 251 aaPredicted RBP11.61□□□□□ -0.55
CLN3-210ENST00000563874 SLC38A9Q8NBW4 561 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 TSTD1Q8NFU3 115 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 OR10G3Q8NGC4 313 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 POC1BQ8TC44 478 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 KIRREL1Q96J84 757 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 C20orf24Q9BUV8 137 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 PECRQ9BY49 303 aa11.61□□□□□ -0.55
CLN3-210ENST00000563874 C14orf166Q9Y224 244 aaKnown RBP11.61□□□□□ -0.55
CLN3-210ENST00000563874 MED19A0JLT2 244 aaPredicted RBP11.6□□□□□ -0.55
CLN3-210ENST00000563874 DHRS7CA6NNS2 312 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 LMO7DNF2Z398 122 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 TRAF3IP2O43734 574 aaPredicted RBP11.6□□□□□ -0.55
CLN3-210ENST00000563874 CSNK1EP49674 416 aaKnown RBP11.6□□□□□ -0.55
CLN3-210ENST00000563874 PRSS12P56730 875 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 TMEM33P57088 247 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 SSTP61278 116 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 HABP2Q14520 560 aaPredicted RBP11.6□□□□□ -0.55
CLN3-210ENST00000563874 C16orf54Q6UWD8 224 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 SEMA6DQ8NFY4 1073 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 OR6S1Q8NH40 331 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 ISOC2Q96AB3 205 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 PGAM5Q96HS1 289 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 ZNF2Q9BSG1 426 aaPredicted RBP11.6□□□□□ -0.55
CLN3-210ENST00000563874 MOB1AQ9H8S9 216 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 RPS10P5Q9NQ39 176 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 MCTS1Q9ULC4 181 aaKnown RBP11.6□□□□□ -0.55
CLN3-210ENST00000563874 A0A1W2PR77 199 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 IFNA2P01563 188 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 CD5P06127 495 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 FCGR2AP12318 317 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 DAOP14920 347 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 TAS2R46P59540 309 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 SP6Q3SY56 376 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 CDCP2Q5VXM1 449 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 EIF5AL1Q6IS14 154 aaKnown RBP11.6□□□□□ -0.55
CLN3-210ENST00000563874 CRIP3Q6Q6R5 217 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 BTNL8Q6UX41 500 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 RBMS3Q6XE24 437 aaKnown RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms