RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 PCDHB16Q9NRJ7 776 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 GLRX2Q9NS18 164 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 KCNIP1Q9NZI2 227 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 Q9UFV3 132 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 PFDN2Q9UHV9 154 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 PPP1R3CQ9UQK1 317 aa4.74□□□□□ -1.65
VPS13C-209ENST00000560637 WNK1Q9H4A3 2382 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 TRDV1A0A1B0GX56 115 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 OR5H1A6NKK0 313 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 DEFB108AA8MXU0 73 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 CHRNB4P30926 498 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 GNRHRP30968 328 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 CEBPDP49716 269 aaPredicted RBP4.73□□□□□ -1.65
VPS13C-209ENST00000560637 B3GALT5-AS1P59052 145 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 RPS4XP62701 263 aaKnown RBP4.73□□□□□ -1.65
VPS13C-209ENST00000560637 BSPH1Q075Z2 132 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 GLCCI1Q86VQ1 547 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 LRRC29Q8WV35 223 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 SECTM1Q8WVN6 248 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 RNF133Q8WVZ7 376 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 THRSPQ92748 146 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 WNT5BQ9H1J7 359 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 SAP30LQ9HAJ7 183 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 CYB5R1Q9UHQ9 305 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF230Q9UIE0 474 aaPredicted RBP4.73□□□□□ -1.65
VPS13C-209ENST00000560637 RNF150Q9ULK6 438 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 NOP16Q9Y3C1 178 aaKnown RBP4.73□□□□□ -1.65
VPS13C-209ENST00000560637 COL4A2P08572 1712 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.73□□□□□ -1.65
VPS13C-209ENST00000560637 C5orf63A6NC05 138 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 OR14I1A6ND48 311 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 LRRC30A6NM36 301 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 OR4C45A6NMZ5 311 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 PRR32B1ATL7 298 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 B8ZZF3 427 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 MSTNO14793 375 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 TMPRSS2O15393 492 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 DNPH1O43598 174 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 DHRS3O75911 302 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 TTRP02766 147 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 TFF1P04155 84 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 OR4A8P0C604 315 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 COX6B1P14854 86 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 MGMTP16455 207 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 CPEP16870 476 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 ATF1P18846 271 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 RANBP1P43487 201 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 UCP2P55851 309 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 PITPNAQ00169 270 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 ZP4Q12836 540 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 TPBGQ13641 420 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 GGTLC2Q14390 218 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 HNF4GQ14541 408 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 P2RY6Q15077 328 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 CLVS2Q5SYC1 327 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 NSUN5P2Q63ZY6 315 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 OLFML2AQ68BL7 652 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 LIN54Q6MZP7 749 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 TFAP2EQ6VUC0 442 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 THNSL2Q86YJ6 484 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 CPEB3Q8NE35 698 aaKnown RBP4.73□□□□□ -1.65
VPS13C-209ENST00000560637 NEUROG1Q92886 237 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 MMP28Q9H239 520 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 NDUFB11Q9NX14 153 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 ETAA1Q9NY74 926 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF69Q9UC07 566 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 IGHV3-43A0A0B4J1X8 118 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 C10orf142B7Z368 130 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 WRBO00258 174 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 SULT1B1O43704 296 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 SSX4O60224 188 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 NXPH3O95157 252 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 GABARAPO95166 117 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 RAB3DO95716 219 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 PMP2P02689 132 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 CST2P09228 141 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 IGHV3-43DP0DP04 118 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF12P17014 697 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 OMGP23515 440 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 S100GP29377 79 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 NTF4P34130 210 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 KIR3DL2P43630 455 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 LSM6P62312 80 aaKnown RBP4.73□□□□□ -1.65
VPS13C-209ENST00000560637 GNB2P62879 340 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 GK2Q14410 553 aaPredicted RBP4.73□□□□□ -1.65
VPS13C-209ENST00000560637 CDONQ4KMG0 1287 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 H3F3CQ6NXT2 135 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 LINC00114Q6XXX2 140 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 WDFY1Q8IWB7 410 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF808Q8N4W9 903 aaPredicted RBP4.73□□□□□ -1.65
VPS13C-209ENST00000560637 CCDC54Q8NEL0 328 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 OR5H2Q8NGV7 314 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 OR13G1Q8NGZ3 307 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 OR6S1Q8NH40 331 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 CAPSLQ8WWF8 208 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 PERPQ96FX8 193 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 METTL8Q9H825 291 aaKnown RBP4.73□□□□□ -1.65
VPS13C-209ENST00000560637 ZDHHC11Q9H8X9 412 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 CHODLQ9H9P2 273 aa4.73□□□□□ -1.65
VPS13C-209ENST00000560637 EHFQ9NZC4 300 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms