RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 SLC5A10A0PJK1 596 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 ANKRD20A5PA0PJZ0 165 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 COLCA2A8K830 154 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 M0QX08 132 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 POLR1CO15160 346 aaPredicted RBP0.97□□□□□ -2.25
USP3-209ENST00000558925 CCDC22O60826 627 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 MED6O75586 246 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 VAMP5O95183 116 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 BRI3O95415 125 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 PTHP01270 115 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 P01737 135 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 HLA-DQA1P01909 254 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 MT-ND4P03905 459 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 RHOCP08134 193 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 SLC35G6P0C7Q6 338 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 ZNF688P0C7X2 276 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 CD28P10747 220 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 PRKACBP22694 351 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 HTR1DP28221 377 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 APLNRP35414 380 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 P2RY2P41231 377 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 MTPNP58546 118 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 LINC00315P59091 139 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 TAS2R39P59534 338 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 PFN3P60673 137 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 UBE2KP61086 200 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 PITPNAQ00169 270 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 IFITM3Q01628 133 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 ST3GAL4Q11206 333 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 XRCC4Q13426 336 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 TMED1Q13445 227 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 EIF4EBP1Q13541 118 aaPredicted RBP0.97□□□□□ -2.25
USP3-209ENST00000558925 MOBPQ13875 183 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 GUSBP1Q15486 140 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 UBE2SQ16763 222 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 TEX30Q5JUR7 227 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 FAHD1Q6P587 224 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 DEGS2Q6QHC5 323 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 TMPRSS11AQ6ZMR5 421 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 FAM19A1Q7Z5A9 133 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 PRNTQ86SH4 94 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 SETD3Q86TU7 594 aaPredicted RBP0.97□□□□□ -2.25
USP3-209ENST00000558925 MDP1Q86V88 176 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 ZNF101Q8IZC7 436 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 SELENOHQ8IZQ5 122 aaKnown RBP0.97□□□□□ -2.25
USP3-209ENST00000558925 LINC00337Q8N6G1 96 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 CDRT4Q8N9R6 151 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 SPERTQ8NA61 448 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 OR6K6Q8NGW6 343 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 OR6N2Q8NGY6 317 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 OR2L8Q8NGY9 312 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 OR8K3Q8NH51 312 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 OR1L1Q8NH94 360 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 LILRB4Q8NHJ6 448 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 CDKL2Q92772 493 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 TNFRSF14Q92956 283 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 STARD4Q96DR4 205 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 C19orf60Q96EN9 201 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 CYYR1Q96J86 154 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 ALS2CR12Q96Q35 445 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 SPACA5Q96QH8 159 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 TSNAXQ99598 290 aaKnown RBP0.97□□□□□ -2.25
USP3-209ENST00000558925 NAPGQ99747 312 aaPredicted RBP0.97□□□□□ -2.25
USP3-209ENST00000558925 RNF5Q99942 180 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 SULT4A1Q9BR01 284 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 TIMM29Q9BSF4 260 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 MARVELD1Q9BSK0 173 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 EMC6Q9BV81 110 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 STMN4Q9H169 189 aaPredicted RBP0.97□□□□□ -2.25
USP3-209ENST00000558925 SLC38A1Q9H2H9 487 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 PLEKHA1Q9HB21 404 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 SND1-IT1Q9HBX3 110 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 CSNK1G1Q9HCP0 422 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 TREM1Q9NP99 234 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 TREX1Q9NSU2 369 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 SDHAF2Q9NX18 166 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 C21orf62Q9NYP8 219 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 TAS2R5Q9NYW4 299 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 MRM2Q9UI43 246 aaKnown RBP0.97□□□□□ -2.25
USP3-209ENST00000558925 ENPP5Q9UJA9 477 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 NXT1Q9UKK6 140 aaKnown RBP0.97□□□□□ -2.25
USP3-209ENST00000558925 RAB23Q9ULC3 237 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 RAB26Q9ULW5 256 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 ZNF835Q9Y2P0 537 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 ORC6Q9Y5N6 252 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 RFNGQ9Y644 331 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 SETD1AO15047 1707 aaKnown RBP0.97□□□□□ -2.25
USP3-209ENST00000558925 CACNA1DQ01668 2161 aa0.97□□□□□ -2.25
USP3-209ENST00000558925 COL27A1Q8IZC6 1860 aaPredicted RBP0.97□□□□□ -2.25
USP3-209ENST00000558925 KIF26AQ9ULI4 1882 aaPredicted RBP0.97□□□□□ -2.25
USP3-209ENST00000558925 NUP205Q92621 2012 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 TRIP11Q15643 1979 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 THADAQ6YHU6 1953 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 LOC102724200A0A096LPH7 203 aaPredicted RBP0.96□□□□□ -2.26
USP3-209ENST00000558925 IGKV1-6A0A0C4DH72 117 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 GOLGA8QA0A0J9YX86 632 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 ZNF879B4DU55 563 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 H7C2Y5 167 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 K7ERQ8 282 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 MANBAO00462 879 aa0.96□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms