RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 C10orf35Q96D05 121 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 CPNE2Q96FN4 548 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-232ENST00000557487 PRRX2Q99811 253 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 ST6GALNAC5Q9BVH7 336 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 ARV1Q9H2C2 271 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 DECR2Q9NUI1 292 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 SEMA5BQ9P283 1151 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 EDARQ9UNE0 448 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 STARD10Q9Y365 291 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 THADAQ6YHU6 1953 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 IGLV3-32A0A0A0MS00 114 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 PMS2P1A4D2B8 440 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 SHISA7A6NL88 538 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 UBE2CO00762 179 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 SERPINA5P05154 406 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 SFTPBP07988 381 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 HOXB5P09067 269 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 ZNF17P17021 662 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 CPT2P23786 658 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 FKBP2P26885 142 aaKnown RBP14.34□□□□□ -0.11
SHMT2-232ENST00000557487 CD80P33681 288 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 PTGFRP43088 359 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 RAB5CP51148 216 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 ZNF41P51814 821 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-232ENST00000557487 SUCLG1P53597 346 aaKnown RBP14.34□□□□□ -0.11
SHMT2-232ENST00000557487 ZNF239Q16600 458 aaKnown RBP14.34□□□□□ -0.11
SHMT2-232ENST00000557487 DHRS11Q6UWP2 260 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 Q6ZRG5 221 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 KMT5CQ86Y97 462 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 PLXDC1Q8IUK5 500 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 BHLHE23Q8NDY6 225 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 TAAR9Q96RI9 348 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 EMC6Q9BV81 110 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 PECRQ9BY49 303 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 TGIF2Q9GZN2 237 aa14.34□□□□□ -0.11
SHMT2-232ENST00000557487 C5orf52A6NGY3 159 aa14.33□□□□□ -0.11
SHMT2-232ENST00000557487 PDGFBP01127 241 aaPredicted RBP14.33□□□□□ -0.11
SHMT2-232ENST00000557487 SEC11BP0C7V7 166 aa14.33□□□□□ -0.11
SHMT2-232ENST00000557487 ATXN8OSP0DMR3 200 aa14.33□□□□□ -0.11
SHMT2-232ENST00000557487 PI3P19957 117 aa14.33□□□□□ -0.11
SHMT2-232ENST00000557487 FCGR2CP31995 323 aa14.33□□□□□ -0.11
SHMT2-232ENST00000557487 ZNF133P52736 654 aaPredicted RBP14.33□□□□□ -0.11
SHMT2-232ENST00000557487 RTN4RL2Q86UN3 420 aa14.33□□□□□ -0.11
SHMT2-232ENST00000557487 LURAP1LQ8IV03 231 aa14.33□□□□□ -0.11
SHMT2-232ENST00000557487 SULF2Q8IWU5 870 aa14.33□□□□□ -0.11
SHMT2-232ENST00000557487 PP6455Q8WZ26 134 aa14.33□□□□□ -0.11
SHMT2-232ENST00000557487 FAM71F1Q96KD3 344 aaPredicted RBP14.33□□□□□ -0.11
SHMT2-232ENST00000557487 SPACA5Q96QH8 159 aa14.33□□□□□ -0.11
SHMT2-232ENST00000557487 PNRC2Q9NPJ4 139 aaKnown RBP14.33□□□□□ -0.11
SHMT2-232ENST00000557487 MUC3AQ02505 3323 aa14.33□□□□□ -0.12
SHMT2-232ENST00000557487 BORCS7-ASMTA0A0B4J1R7 106 aa14.33□□□□□ -0.12
SHMT2-232ENST00000557487 LOC102725191A0A1B0GVB3 256 aa14.33□□□□□ -0.12
SHMT2-232ENST00000557487 LMO7DNF2Z398 122 aa14.33□□□□□ -0.12
SHMT2-232ENST00000557487 EIF3GO75821 320 aaKnown RBP eCLIP14.33□□□□□ -0.12
SHMT2-232ENST00000557487 HTR3BO95264 441 aa14.33□□□□□ -0.12
SHMT2-232ENST00000557487 IGLV3-1P01715 115 aa14.33□□□□□ -0.12
SHMT2-232ENST00000557487 S100A6P06703 90 aa14.33□□□□□ -0.12
SHMT2-232ENST00000557487 RCC1P18754 421 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-232ENST00000557487 BLVRBP30043 206 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-232ENST00000557487 KISS1Q15726 138 aa14.33□□□□□ -0.12
SHMT2-232ENST00000557487 ZNF283Q8N7M2 679 aa14.33□□□□□ -0.12
SHMT2-232ENST00000557487 C2CD4CQ8TF44 421 aa14.33□□□□□ -0.12
SHMT2-232ENST00000557487 ZNF251Q9BRH9 671 aa14.33□□□□□ -0.12
SHMT2-232ENST00000557487 SLC7A5P2Q9GIP4 190 aa14.33□□□□□ -0.12
SHMT2-232ENST00000557487 FBXL17Q9UF56 701 aa14.33□□□□□ -0.12
SHMT2-232ENST00000557487 A0A0U1RQV5 110 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 E5RGE8 158 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 TLX3O43711 291 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-232ENST00000557487 TSPAN15O95858 294 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 HPNP05981 417 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 CD38P28907 300 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 PTGER4P35408 488 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 FBXW4P57775 412 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 LSM6P62312 80 aaKnown RBP14.32□□□□□ -0.12
SHMT2-232ENST00000557487 MYBPHQ13203 477 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 HIST3H3Q16695 136 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 GPR157Q5UAW9 335 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 Q6ZSR3 168 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 HIST1H2BAQ96A08 127 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 C14orf79Q96F83 325 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 OXGR1Q96P68 337 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 S100A13Q99584 98 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 CHRDQ9H2X0 955 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 NSG2Q9Y328 171 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 STRAPQ9Y3F4 350 aaKnown RBP14.32□□□□□ -0.12
SHMT2-232ENST00000557487 CUL9Q8IWT3 2517 aa14.32□□□□□ -0.12
SHMT2-232ENST00000557487 IGKV1-9A0A0C4DH69 117 aa14.31□□□□□ -0.12
SHMT2-232ENST00000557487 CRYM-AS1A6NIL9 109 aa14.31□□□□□ -0.12
SHMT2-232ENST00000557487 TRAF3IP2O43734 574 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-232ENST00000557487 ACAA1P09110 424 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-232ENST00000557487 AGAP20933 346 aa14.31□□□□□ -0.12
SHMT2-232ENST00000557487 CD27P26842 260 aa14.31□□□□□ -0.12
SHMT2-232ENST00000557487 TMEM33P57088 247 aa14.31□□□□□ -0.12
SHMT2-232ENST00000557487 EIF2S3LQ2VIR3 472 aaKnown RBP14.31□□□□□ -0.12
SHMT2-232ENST00000557487 RNF144BQ7Z419 303 aa14.31□□□□□ -0.12
SHMT2-232ENST00000557487 CRB3Q9BUF7 120 aa14.31□□□□□ -0.12
SHMT2-232ENST00000557487 PRR13Q9NZ81 148 aa14.31□□□□□ -0.12
SHMT2-232ENST00000557487 LUZP4Q9P127 313 aa14.31□□□□□ -0.12
SHMT2-232ENST00000557487 METTL1Q9UBP6 276 aaKnown RBP14.31□□□□□ -0.12
SHMT2-232ENST00000557487 ZMAT5Q9UDW3 170 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms